miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13943 5' -54.5 NC_003521.1 + 64673 0.7 0.899448
Target:  5'- -cACCgGGCUCCgAGgaGAuGGAGAACCUg -3'
miRNA:   3'- cuUGGgCUGAGG-UCa-CU-CCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 64253 0.76 0.579026
Target:  5'- aGGACCUGAuCUUCAGUcuGGAGAACCUg -3'
miRNA:   3'- -CUUGGGCU-GAGGUCAcuCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 62035 0.67 0.971139
Target:  5'- gGAGCCggCGGCggucCCGGUGAcGGGGAACg- -3'
miRNA:   3'- -CUUGG--GCUGa---GGUCACU-CCUCUUGgg -5'
13943 5' -54.5 NC_003521.1 + 54377 0.67 0.971139
Target:  5'- cGACgaCGGCUCCGGUcuGGAGAacgACCUg -3'
miRNA:   3'- cUUGg-GCUGAGGUCAcuCCUCU---UGGG- -5'
13943 5' -54.5 NC_003521.1 + 52851 0.68 0.937798
Target:  5'- cGAACCCGugUCUuuuaaccaGGUGGGGuggugGGGACUUu -3'
miRNA:   3'- -CUUGGGCugAGG--------UCACUCC-----UCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 50531 0.66 0.986087
Target:  5'- cGGACCCGGCUgCAgcggcaguacggcGUgaucgagggcGAGGAGuGGCCCc -3'
miRNA:   3'- -CUUGGGCUGAgGU-------------CA----------CUCCUC-UUGGG- -5'
13943 5' -54.5 NC_003521.1 + 45888 0.67 0.971139
Target:  5'- aGAGCCUGuuguCUCUuuuuuuucGGGGAGAACCUa -3'
miRNA:   3'- -CUUGGGCu---GAGGuca-----CUCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 32919 0.72 0.826465
Target:  5'- --cCCCGGCguaGGUGGcgccGGAGAGCCCa -3'
miRNA:   3'- cuuGGGCUGaggUCACU----CCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 27619 0.71 0.83543
Target:  5'- gGAGCCUGguGCUCCAGgagcccgagguggacGAGGAGuucaAGCCCg -3'
miRNA:   3'- -CUUGGGC--UGAGGUCa--------------CUCCUC----UUGGG- -5'
13943 5' -54.5 NC_003521.1 + 27365 0.68 0.954754
Target:  5'- gGAGCaCCaGGCUCCAGcc-GGGGGGCCa -3'
miRNA:   3'- -CUUG-GG-CUGAGGUCacuCCUCUUGGg -5'
13943 5' -54.5 NC_003521.1 + 26954 0.68 0.950847
Target:  5'- -cGCCCGGCggguacgUCAGUGguAGGAGuucCCCg -3'
miRNA:   3'- cuUGGGCUGa------GGUCAC--UCCUCuu-GGG- -5'
13943 5' -54.5 NC_003521.1 + 19337 0.68 0.954754
Target:  5'- --uCCCGgggaGCUCCGGcGAGGA--GCCCu -3'
miRNA:   3'- cuuGGGC----UGAGGUCaCUCCUcuUGGG- -5'
13943 5' -54.5 NC_003521.1 + 12480 1.11 0.004988
Target:  5'- cGAACCCGACUCCAGUGAGGAGAACCCc -3'
miRNA:   3'- -CUUGGGCUGAGGUCACUCCUCUUGGG- -5'
13943 5' -54.5 NC_003521.1 + 7161 0.66 0.984576
Target:  5'- gGAACCCGcGCcCCAGgccGAGuAGAugCCu -3'
miRNA:   3'- -CUUGGGC-UGaGGUCa--CUCcUCUugGG- -5'
13943 5' -54.5 NC_003521.1 + 4222 0.77 0.549579
Target:  5'- uGAAgCCGGCcCCGG-GAGGAGGACCg -3'
miRNA:   3'- -CUUgGGCUGaGGUCaCUCCUCUUGGg -5'
13943 5' -54.5 NC_003521.1 + 737 0.7 0.908001
Target:  5'- uGAACCCucGAUuucaacaacacacauUcCCAGUGAGGGcGGACCCc -3'
miRNA:   3'- -CUUGGG--CUG---------------A-GGUCACUCCU-CUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.