miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13944 3' -57.1 NC_003521.1 + 60335 0.67 0.888143
Target:  5'- gGCGUCAGGUgaugGUUGCUGacuaccgaGGGCuuGGUa -3'
miRNA:   3'- -CGCAGUCCA----CAACGGCg-------CUCGu-CCAg -5'
13944 3' -57.1 NC_003521.1 + 12707 1.12 0.002311
Target:  5'- aGCGUCAGGUGUUGCCGCGAGCAGGUCa -3'
miRNA:   3'- -CGCAGUCCACAACGGCGCUCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 75612 0.75 0.507621
Target:  5'- aGCGUCAGGUGguagucGUCGCGGGCcgccGUCa -3'
miRNA:   3'- -CGCAGUCCACaa----CGGCGCUCGuc--CAG- -5'
13944 3' -57.1 NC_003521.1 + 75138 0.68 0.844998
Target:  5'- -gGUCGGGg--UGCuCGCGGaagaugucguGCAGGUCg -3'
miRNA:   3'- cgCAGUCCacaACG-GCGCU----------CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 72362 0.68 0.844998
Target:  5'- gGCGUCGGGUaaauaaaacGCCGaCGcgguuGCGGGUCg -3'
miRNA:   3'- -CGCAGUCCAcaa------CGGC-GCu----CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 187928 0.74 0.526513
Target:  5'- aCGUCGGGgacgGCgGCGAGgAGGUCg -3'
miRNA:   3'- cGCAGUCCacaaCGgCGCUCgUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 43477 0.69 0.795397
Target:  5'- gGCGUCuGGUGcagcagGCCGaUGAGCAcguugcacaGGUCg -3'
miRNA:   3'- -CGCAGuCCACaa----CGGC-GCUCGU---------CCAG- -5'
13944 3' -57.1 NC_003521.1 + 187690 0.69 0.820917
Target:  5'- cGCGgcgagCAGGgGaUGgCGCGucGGCAGGUCg -3'
miRNA:   3'- -CGCa----GUCCaCaACgGCGC--UCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 184636 0.67 0.888143
Target:  5'- aGCGaCAGGUGUcagaacuacUGuCCGCuGAGCgcgcugauuuacAGGUCg -3'
miRNA:   3'- -CGCaGUCCACA---------AC-GGCG-CUCG------------UCCAG- -5'
13944 3' -57.1 NC_003521.1 + 121293 0.66 0.918371
Target:  5'- gGCGaCgAGGUcGgcGCCGcCGAGgAGGUCu -3'
miRNA:   3'- -CGCaG-UCCA-CaaCGGC-GCUCgUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 55370 0.66 0.938574
Target:  5'- cGCGUCucgccGGGUGcggaggUGaUCGcCGAGCGGGUg -3'
miRNA:   3'- -CGCAG-----UCCACa-----AC-GGC-GCUCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 12846 0.7 0.786605
Target:  5'- -gGUCGuGGUGggUGCCGcCGuGguGGUCg -3'
miRNA:   3'- cgCAGU-CCACa-ACGGC-GCuCguCCAG- -5'
13944 3' -57.1 NC_003521.1 + 201749 0.72 0.673335
Target:  5'- aGgGUCAGcGUGUUG-CGCu-GCAGGUCg -3'
miRNA:   3'- -CgCAGUC-CACAACgGCGcuCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 146782 0.67 0.881453
Target:  5'- ---cCGGGUGgaGCCGCcguuucuGCGGGUCg -3'
miRNA:   3'- cgcaGUCCACaaCGGCGcu-----CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 73674 0.67 0.881453
Target:  5'- -gGUCGGGgaaGUgGCgGCGcAGCAGGUg -3'
miRNA:   3'- cgCAGUCCa--CAaCGgCGC-UCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 179833 0.69 0.795397
Target:  5'- aGCGUCGcGGUGUgggGCCaGUGucGCAGGg- -3'
miRNA:   3'- -CGCAGU-CCACAa--CGG-CGCu-CGUCCag -5'
13944 3' -57.1 NC_003521.1 + 156796 0.67 0.894622
Target:  5'- uUGUCacAGGUGUaGCCuucgaGCGuGUAGGUCu -3'
miRNA:   3'- cGCAG--UCCACAaCGG-----CGCuCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 61621 0.66 0.928919
Target:  5'- uUG-CAGGaagcggGCCGUGGGCAGGUg -3'
miRNA:   3'- cGCaGUCCacaa--CGGCGCUCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 62301 0.69 0.811717
Target:  5'- gGCGUCcgcgggacgggcgAGGca-UGCCcgGCGGGCGGGUCg -3'
miRNA:   3'- -CGCAG-------------UCCacaACGG--CGCUCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 7612 0.68 0.874556
Target:  5'- aGUGaccUguGGUGUUgaGCCGCGAGgccaGGGUCc -3'
miRNA:   3'- -CGC---AguCCACAA--CGGCGCUCg---UCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.