miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13944 3' -57.1 NC_003521.1 + 43477 0.69 0.795397
Target:  5'- gGCGUCuGGUGcagcagGCCGaUGAGCAcguugcacaGGUCg -3'
miRNA:   3'- -CGCAGuCCACaa----CGGC-GCUCGU---------CCAG- -5'
13944 3' -57.1 NC_003521.1 + 61621 0.66 0.928919
Target:  5'- uUG-CAGGaagcggGCCGUGGGCAGGUg -3'
miRNA:   3'- cGCaGUCCacaa--CGGCGCUCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 60335 0.67 0.888143
Target:  5'- gGCGUCAGGUgaugGUUGCUGacuaccgaGGGCuuGGUa -3'
miRNA:   3'- -CGCAGUCCA----CAACGGCg-------CUCGu-CCAg -5'
13944 3' -57.1 NC_003521.1 + 162506 0.68 0.857935
Target:  5'- uGCGUCgugacguuguuuguGGGUGUUGCUagGCGGGUAGa-- -3'
miRNA:   3'- -CGCAG--------------UCCACAACGG--CGCUCGUCcag -5'
13944 3' -57.1 NC_003521.1 + 115714 0.7 0.759483
Target:  5'- aGCGUgccCAGGgagaagaggaUGUUGCCguuGCGGGCcAGGUCc -3'
miRNA:   3'- -CGCA---GUCC----------ACAACGG---CGCUCG-UCCAG- -5'
13944 3' -57.1 NC_003521.1 + 124665 0.7 0.759483
Target:  5'- aGCGUgaAGGUGgcGUCGCG-GUAGGUg -3'
miRNA:   3'- -CGCAg-UCCACaaCGGCGCuCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 239566 0.72 0.673335
Target:  5'- aGgGUCAGcGUGUUG-CGCu-GCAGGUCg -3'
miRNA:   3'- -CgCAGUC-CACAACgGCGcuCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 141976 0.66 0.933858
Target:  5'- aGCGUCAGGa---GCUGC-AGCGGGa- -3'
miRNA:   3'- -CGCAGUCCacaaCGGCGcUCGUCCag -5'
13944 3' -57.1 NC_003521.1 + 67565 0.66 0.923756
Target:  5'- uGUGUCAGGcGgcggGCCccGCGGGcCAGaGUCg -3'
miRNA:   3'- -CGCAGUCCaCaa--CGG--CGCUC-GUC-CAG- -5'
13944 3' -57.1 NC_003521.1 + 130579 0.66 0.918371
Target:  5'- aGCGcCAGGUGcUGUacuucaaGCu-GCAGGUCa -3'
miRNA:   3'- -CGCaGUCCACaACGg------CGcuCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 110683 0.68 0.852673
Target:  5'- cGCGUC-GGUG--GCCuCGAGCuugAGGUCg -3'
miRNA:   3'- -CGCAGuCCACaaCGGcGCUCG---UCCAG- -5'
13944 3' -57.1 NC_003521.1 + 127680 0.68 0.844998
Target:  5'- gGCGUCc-GUGUUGCCGUGcaccAGCAcGUCc -3'
miRNA:   3'- -CGCAGucCACAACGGCGC----UCGUcCAG- -5'
13944 3' -57.1 NC_003521.1 + 34427 0.69 0.834752
Target:  5'- gGCGUCGcGGUGcgacuccacguaggcGCUGCGGGCcuggGGGUCg -3'
miRNA:   3'- -CGCAGU-CCACaa-------------CGGCGCUCG----UCCAG- -5'
13944 3' -57.1 NC_003521.1 + 218740 0.69 0.812561
Target:  5'- gGCGUCGGGacgGUcccccaUGCUGCGuucGCGGGcUCg -3'
miRNA:   3'- -CGCAGUCCa--CA------ACGGCGCu--CGUCC-AG- -5'
13944 3' -57.1 NC_003521.1 + 133690 0.67 0.906935
Target:  5'- cUGUCAGGUG-UGCCuguaCGAGCuGGa- -3'
miRNA:   3'- cGCAGUCCACaACGGc---GCUCGuCCag -5'
13944 3' -57.1 NC_003521.1 + 100190 0.67 0.906935
Target:  5'- gGCG-CAGGcucucgGCCGUGuaccgcuGCAGGUCg -3'
miRNA:   3'- -CGCaGUCCacaa--CGGCGCu------CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 90914 0.67 0.912764
Target:  5'- gGCGUC-GGUGUUGuuGCcGGGCAa--- -3'
miRNA:   3'- -CGCAGuCCACAACggCG-CUCGUccag -5'
13944 3' -57.1 NC_003521.1 + 213611 0.67 0.912764
Target:  5'- gGCuGUUGGGguggcgGUcGCCGCGcAGCAGGa- -3'
miRNA:   3'- -CG-CAGUCCa-----CAaCGGCGC-UCGUCCag -5'
13944 3' -57.1 NC_003521.1 + 103048 0.66 0.918371
Target:  5'- uGCG-CAGGUGcUGCaGacaGGGCGGGUg -3'
miRNA:   3'- -CGCaGUCCACaACGgCg--CUCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 123291 0.66 0.918371
Target:  5'- aGCGUCAGGU----CCGCGGGCgacucGGcGUCc -3'
miRNA:   3'- -CGCAGUCCAcaacGGCGCUCG-----UC-CAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.