miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13944 3' -57.1 NC_003521.1 + 124665 0.7 0.759483
Target:  5'- aGCGUgaAGGUGgcGUCGCG-GUAGGUg -3'
miRNA:   3'- -CGCAg-UCCACaaCGGCGCuCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 34339 0.7 0.750221
Target:  5'- aGCGgcgCAGGgcgGagGCCGUGAGgccCAGGUCc -3'
miRNA:   3'- -CGCa--GUCCa--CaaCGGCGCUC---GUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 206625 0.71 0.712288
Target:  5'- -gGUCGGGUGgacgUGUCGCGAcauggacguGCAGGg- -3'
miRNA:   3'- cgCAGUCCACa---ACGGCGCU---------CGUCCag -5'
13944 3' -57.1 NC_003521.1 + 239566 0.72 0.673335
Target:  5'- aGgGUCAGcGUGUUG-CGCu-GCAGGUCg -3'
miRNA:   3'- -CgCAGUC-CACAACgGCGcuCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 81981 0.72 0.643762
Target:  5'- cGCGguagagcCAGGUGcUGCCGCGGGUGuGGUa -3'
miRNA:   3'- -CGCa------GUCCACaACGGCGCUCGU-CCAg -5'
13944 3' -57.1 NC_003521.1 + 196885 0.68 0.860161
Target:  5'- cCG-CGGGUGagGCCGgGgcggaaGGCGGGUCg -3'
miRNA:   3'- cGCaGUCCACaaCGGCgC------UCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 113382 0.68 0.867458
Target:  5'- aGgGUUAcGGcGgacGCCGCGGGCGGGUg -3'
miRNA:   3'- -CgCAGU-CCaCaa-CGGCGCUCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 141976 0.66 0.933858
Target:  5'- aGCGUCAGGa---GCUGC-AGCGGGa- -3'
miRNA:   3'- -CGCAGUCCacaaCGGCGcUCGUCCag -5'
13944 3' -57.1 NC_003521.1 + 67565 0.66 0.923756
Target:  5'- uGUGUCAGGcGgcggGCCccGCGGGcCAGaGUCg -3'
miRNA:   3'- -CGCAGUCCaCaa--CGG--CGCUC-GUC-CAG- -5'
13944 3' -57.1 NC_003521.1 + 130579 0.66 0.918371
Target:  5'- aGCGcCAGGUGcUGUacuucaaGCu-GCAGGUCa -3'
miRNA:   3'- -CGCaGUCCACaACGg------CGcuCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 123291 0.66 0.918371
Target:  5'- aGCGUCAGGU----CCGCGGGCgacucGGcGUCc -3'
miRNA:   3'- -CGCAGUCCAcaacGGCGCUCG-----UC-CAG- -5'
13944 3' -57.1 NC_003521.1 + 103048 0.66 0.918371
Target:  5'- uGCG-CAGGUGcUGCaGacaGGGCGGGUg -3'
miRNA:   3'- -CGCaGUCCACaACGgCg--CUCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 213611 0.67 0.912764
Target:  5'- gGCuGUUGGGguggcgGUcGCCGCGcAGCAGGa- -3'
miRNA:   3'- -CG-CAGUCCa-----CAaCGGCGC-UCGUCCag -5'
13944 3' -57.1 NC_003521.1 + 90914 0.67 0.912764
Target:  5'- gGCGUC-GGUGUUGuuGCcGGGCAa--- -3'
miRNA:   3'- -CGCAGuCCACAACggCG-CUCGUccag -5'
13944 3' -57.1 NC_003521.1 + 100190 0.67 0.906935
Target:  5'- gGCG-CAGGcucucgGCCGUGuaccgcuGCAGGUCg -3'
miRNA:   3'- -CGCaGUCCacaa--CGGCGCu------CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 133690 0.67 0.906935
Target:  5'- cUGUCAGGUG-UGCCuguaCGAGCuGGa- -3'
miRNA:   3'- cGCAGUCCACaACGGc---GCUCGuCCag -5'
13944 3' -57.1 NC_003521.1 + 102662 0.67 0.888143
Target:  5'- gGCuGUCGGGcacgUGCU-UGAGCAGGUCg -3'
miRNA:   3'- -CG-CAGUCCaca-ACGGcGCUCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 137962 0.67 0.881453
Target:  5'- cGCGUguGGUaugccgacgugGUgcgcugUGuCCGCGcGCAGGUCg -3'
miRNA:   3'- -CGCAguCCA-----------CA------AC-GGCGCuCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 98725 0.67 0.881453
Target:  5'- aGCGgaGGGUaccUGCCGCGGgGguGGUCg -3'
miRNA:   3'- -CGCagUCCAca-ACGGCGCU-CguCCAG- -5'
13944 3' -57.1 NC_003521.1 + 70280 0.68 0.874556
Target:  5'- gGCG-CAGGUcGgcGCCgaagagaaaGCGGuGCAGGUCg -3'
miRNA:   3'- -CGCaGUCCA-CaaCGG---------CGCU-CGUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.