miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13944 3' -57.1 NC_003521.1 + 156796 0.67 0.894622
Target:  5'- uUGUCacAGGUGUaGCCuucgaGCGuGUAGGUCu -3'
miRNA:   3'- cGCAG--UCCACAaCGG-----CGCuCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 196829 0.67 0.894622
Target:  5'- gGCGUCGGGgagGUcaUGCUGUGGGUcGGc- -3'
miRNA:   3'- -CGCAGUCCa--CA--ACGGCGCUCGuCCag -5'
13944 3' -57.1 NC_003521.1 + 146782 0.67 0.881453
Target:  5'- ---cCGGGUGgaGCCGCcguuucuGCGGGUCg -3'
miRNA:   3'- cgcaGUCCACaaCGGCGcu-----CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 184636 0.67 0.888143
Target:  5'- aGCGaCAGGUGUcagaacuacUGuCCGCuGAGCgcgcugauuuacAGGUCg -3'
miRNA:   3'- -CGCaGUCCACA---------AC-GGCG-CUCG------------UCCAG- -5'
13944 3' -57.1 NC_003521.1 + 60335 0.67 0.888143
Target:  5'- gGCGUCAGGUgaugGUUGCUGacuaccgaGGGCuuGGUa -3'
miRNA:   3'- -CGCAGUCCA----CAACGGCg-------CUCGu-CCAg -5'
13944 3' -57.1 NC_003521.1 + 98725 0.67 0.881453
Target:  5'- aGCGgaGGGUaccUGCCGCGGgGguGGUCg -3'
miRNA:   3'- -CGCagUCCAca-ACGGCGCU-CguCCAG- -5'
13944 3' -57.1 NC_003521.1 + 213611 0.67 0.912764
Target:  5'- gGCuGUUGGGguggcgGUcGCCGCGcAGCAGGa- -3'
miRNA:   3'- -CG-CAGUCCa-----CAaCGGCGC-UCGUCCag -5'
13944 3' -57.1 NC_003521.1 + 90914 0.67 0.912764
Target:  5'- gGCGUC-GGUGUUGuuGCcGGGCAa--- -3'
miRNA:   3'- -CGCAGuCCACAACggCG-CUCGUccag -5'
13944 3' -57.1 NC_003521.1 + 100190 0.67 0.906935
Target:  5'- gGCG-CAGGcucucgGCCGUGuaccgcuGCAGGUCg -3'
miRNA:   3'- -CGCaGUCCacaa--CGGCGCu------CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 133690 0.67 0.906935
Target:  5'- cUGUCAGGUG-UGCCuguaCGAGCuGGa- -3'
miRNA:   3'- cGCAGUCCACaACGGc---GCUCGuCCag -5'
13944 3' -57.1 NC_003521.1 + 137962 0.67 0.881453
Target:  5'- cGCGUguGGUaugccgacgugGUgcgcugUGuCCGCGcGCAGGUCg -3'
miRNA:   3'- -CGCAguCCA-----------CA------AC-GGCGCuCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 75138 0.68 0.844998
Target:  5'- -gGUCGGGg--UGCuCGCGGaagaugucguGCAGGUCg -3'
miRNA:   3'- cgCAGUCCacaACG-GCGCU----------CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 113382 0.68 0.867458
Target:  5'- aGgGUUAcGGcGgacGCCGCGGGCGGGUg -3'
miRNA:   3'- -CgCAGU-CCaCaa-CGGCGCUCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 110683 0.68 0.852673
Target:  5'- cGCGUC-GGUG--GCCuCGAGCuugAGGUCg -3'
miRNA:   3'- -CGCAGuCCACaaCGGcGCUCG---UCCAG- -5'
13944 3' -57.1 NC_003521.1 + 70280 0.68 0.874556
Target:  5'- gGCG-CAGGUcGgcGCCgaagagaaaGCGGuGCAGGUCg -3'
miRNA:   3'- -CGCaGUCCA-CaaCGG---------CGCU-CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 72362 0.68 0.844998
Target:  5'- gGCGUCGGGUaaauaaaacGCCGaCGcgguuGCGGGUCg -3'
miRNA:   3'- -CGCAGUCCAcaa------CGGC-GCu----CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 196885 0.68 0.860161
Target:  5'- cCG-CGGGUGagGCCGgGgcggaaGGCGGGUCg -3'
miRNA:   3'- cGCaGUCCACaaCGGCgC------UCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 127680 0.68 0.844998
Target:  5'- gGCGUCc-GUGUUGCCGUGcaccAGCAcGUCc -3'
miRNA:   3'- -CGCAGucCACAACGGCGC----UCGUcCAG- -5'
13944 3' -57.1 NC_003521.1 + 7612 0.68 0.874556
Target:  5'- aGUGaccUguGGUGUUgaGCCGCGAGgccaGGGUCc -3'
miRNA:   3'- -CGC---AguCCACAA--CGGCGCUCg---UCCAG- -5'
13944 3' -57.1 NC_003521.1 + 162506 0.68 0.857935
Target:  5'- uGCGUCgugacguuguuuguGGGUGUUGCUagGCGGGUAGa-- -3'
miRNA:   3'- -CGCAG--------------UCCACAACGG--CGCUCGUCcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.