miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13944 3' -57.1 NC_003521.1 + 78736 0.66 0.94307
Target:  5'- aGCGgcCAGGaGUUGUCGuCGGGCAcggccacgaGGUCc -3'
miRNA:   3'- -CGCa-GUCCaCAACGGC-GCUCGU---------CCAG- -5'
13944 3' -57.1 NC_003521.1 + 81981 0.72 0.643762
Target:  5'- cGCGguagagcCAGGUGcUGCCGCGGGUGuGGUa -3'
miRNA:   3'- -CGCa------GUCCACaACGGCGCUCGU-CCAg -5'
13944 3' -57.1 NC_003521.1 + 90914 0.67 0.912764
Target:  5'- gGCGUC-GGUGUUGuuGCcGGGCAa--- -3'
miRNA:   3'- -CGCAGuCCACAACggCG-CUCGUccag -5'
13944 3' -57.1 NC_003521.1 + 98725 0.67 0.881453
Target:  5'- aGCGgaGGGUaccUGCCGCGGgGguGGUCg -3'
miRNA:   3'- -CGCagUCCAca-ACGGCGCU-CguCCAG- -5'
13944 3' -57.1 NC_003521.1 + 100190 0.67 0.906935
Target:  5'- gGCG-CAGGcucucgGCCGUGuaccgcuGCAGGUCg -3'
miRNA:   3'- -CGCaGUCCacaa--CGGCGCu------CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 102662 0.67 0.888143
Target:  5'- gGCuGUCGGGcacgUGCU-UGAGCAGGUCg -3'
miRNA:   3'- -CG-CAGUCCaca-ACGGcGCUCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 103048 0.66 0.918371
Target:  5'- uGCG-CAGGUGcUGCaGacaGGGCGGGUg -3'
miRNA:   3'- -CGCaGUCCACaACGgCg--CUCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 110683 0.68 0.852673
Target:  5'- cGCGUC-GGUG--GCCuCGAGCuugAGGUCg -3'
miRNA:   3'- -CGCAGuCCACaaCGGcGCUCG---UCCAG- -5'
13944 3' -57.1 NC_003521.1 + 113382 0.68 0.867458
Target:  5'- aGgGUUAcGGcGgacGCCGCGGGCGGGUg -3'
miRNA:   3'- -CgCAGU-CCaCaa-CGGCGCUCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 115714 0.7 0.759483
Target:  5'- aGCGUgccCAGGgagaagaggaUGUUGCCguuGCGGGCcAGGUCc -3'
miRNA:   3'- -CGCA---GUCC----------ACAACGG---CGCUCG-UCCAG- -5'
13944 3' -57.1 NC_003521.1 + 119610 0.66 0.941744
Target:  5'- aGCGUCucgugcugcAGGUGgacguuuacccacugGCCGCGGGCGuccGUCu -3'
miRNA:   3'- -CGCAG---------UCCACaa-------------CGGCGCUCGUc--CAG- -5'
13944 3' -57.1 NC_003521.1 + 121293 0.66 0.918371
Target:  5'- gGCGaCgAGGUcGgcGCCGcCGAGgAGGUCu -3'
miRNA:   3'- -CGCaG-UCCA-CaaCGGC-GCUCgUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 123291 0.66 0.918371
Target:  5'- aGCGUCAGGU----CCGCGGGCgacucGGcGUCc -3'
miRNA:   3'- -CGCAGUCCAcaacGGCGCUCG-----UC-CAG- -5'
13944 3' -57.1 NC_003521.1 + 123474 0.66 0.938574
Target:  5'- gGCGUCAGcuccGUGUccGUCGCcGGCGGGg- -3'
miRNA:   3'- -CGCAGUC----CACAa-CGGCGcUCGUCCag -5'
13944 3' -57.1 NC_003521.1 + 124665 0.7 0.759483
Target:  5'- aGCGUgaAGGUGgcGUCGCG-GUAGGUg -3'
miRNA:   3'- -CGCAg-UCCACaaCGGCGCuCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 125000 0.73 0.604244
Target:  5'- aGCGUCAGG-GUcaUGuuGCGcAGCAGGc- -3'
miRNA:   3'- -CGCAGUCCaCA--ACggCGC-UCGUCCag -5'
13944 3' -57.1 NC_003521.1 + 127680 0.68 0.844998
Target:  5'- gGCGUCc-GUGUUGCCGUGcaccAGCAcGUCc -3'
miRNA:   3'- -CGCAGucCACAACGGCGC----UCGUcCAG- -5'
13944 3' -57.1 NC_003521.1 + 128320 0.66 0.938113
Target:  5'- cCGU--GGUGUaGCCGCGguccucgGGCAGGUa -3'
miRNA:   3'- cGCAguCCACAaCGGCGC-------UCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 128372 0.66 0.94307
Target:  5'- -gGUCAGGUccacGUUG-CGCuccAGCGGGUCc -3'
miRNA:   3'- cgCAGUCCA----CAACgGCGc--UCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 130579 0.66 0.918371
Target:  5'- aGCGcCAGGUGcUGUacuucaaGCu-GCAGGUCa -3'
miRNA:   3'- -CGCaGUCCACaACGg------CGcuCGUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.