miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13944 3' -57.1 NC_003521.1 + 166404 0.7 0.76864
Target:  5'- uGCGUCAaGUcGUaGCCGCGGcaCAGGUCg -3'
miRNA:   3'- -CGCAGUcCA-CAaCGGCGCUc-GUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 115714 0.7 0.759483
Target:  5'- aGCGUgccCAGGgagaagaggaUGUUGCCguuGCGGGCcAGGUCc -3'
miRNA:   3'- -CGCA---GUCC----------ACAACGG---CGCUCG-UCCAG- -5'
13944 3' -57.1 NC_003521.1 + 124665 0.7 0.759483
Target:  5'- aGCGUgaAGGUGgcGUCGCG-GUAGGUg -3'
miRNA:   3'- -CGCAg-UCCACaaCGGCGCuCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 34339 0.7 0.750221
Target:  5'- aGCGgcgCAGGgcgGagGCCGUGAGgccCAGGUCc -3'
miRNA:   3'- -CGCa--GUCCa--CaaCGGCGCUC---GUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 206625 0.71 0.712288
Target:  5'- -gGUCGGGUGgacgUGUCGCGAcauggacguGCAGGg- -3'
miRNA:   3'- cgCAGUCCACa---ACGGCGCU---------CGUCCag -5'
13944 3' -57.1 NC_003521.1 + 239566 0.72 0.673335
Target:  5'- aGgGUCAGcGUGUUG-CGCu-GCAGGUCg -3'
miRNA:   3'- -CgCAGUC-CACAACgGCGcuCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 81981 0.72 0.643762
Target:  5'- cGCGguagagcCAGGUGcUGCCGCGGGUGuGGUa -3'
miRNA:   3'- -CGCa------GUCCACaACGGCGCUCGU-CCAg -5'
13944 3' -57.1 NC_003521.1 + 125000 0.73 0.604244
Target:  5'- aGCGUCAGG-GUcaUGuuGCGcAGCAGGc- -3'
miRNA:   3'- -CGCAGUCCaCA--ACggCGC-UCGUCCag -5'
13944 3' -57.1 NC_003521.1 + 216809 0.7 0.776784
Target:  5'- cGCGUCAGGUuacgccgGaUGgCGCGcAGgAGGUCg -3'
miRNA:   3'- -CGCAGUCCA-------CaACgGCGC-UCgUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 228105 0.69 0.804052
Target:  5'- uCGUcCAGGcUGUUGCgCGCGuAGCAGccGUCg -3'
miRNA:   3'- cGCA-GUCC-ACAACG-GCGC-UCGUC--CAG- -5'
13944 3' -57.1 NC_003521.1 + 70280 0.68 0.874556
Target:  5'- gGCG-CAGGUcGgcGCCgaagagaaaGCGGuGCAGGUCg -3'
miRNA:   3'- -CGCaGUCCA-CaaCGG---------CGCU-CGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 113382 0.68 0.867458
Target:  5'- aGgGUUAcGGcGgacGCCGCGGGCGGGUg -3'
miRNA:   3'- -CgCAGU-CCaCaa-CGGCGCUCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 196885 0.68 0.860161
Target:  5'- cCG-CGGGUGagGCCGgGgcggaaGGCGGGUCg -3'
miRNA:   3'- cGCaGUCCACaaCGGCgC------UCGUCCAG- -5'
13944 3' -57.1 NC_003521.1 + 162506 0.68 0.857935
Target:  5'- uGCGUCgugacguuguuuguGGGUGUUGCUagGCGGGUAGa-- -3'
miRNA:   3'- -CGCAG--------------UCCACAACGG--CGCUCGUCcag -5'
13944 3' -57.1 NC_003521.1 + 110683 0.68 0.852673
Target:  5'- cGCGUC-GGUG--GCCuCGAGCuugAGGUCg -3'
miRNA:   3'- -CGCAGuCCACaaCGGcGCUCG---UCCAG- -5'
13944 3' -57.1 NC_003521.1 + 127680 0.68 0.844998
Target:  5'- gGCGUCc-GUGUUGCCGUGcaccAGCAcGUCc -3'
miRNA:   3'- -CGCAGucCACAACGGCGC----UCGUcCAG- -5'
13944 3' -57.1 NC_003521.1 + 34427 0.69 0.834752
Target:  5'- gGCGUCGcGGUGcgacuccacguaggcGCUGCGGGCcuggGGGUCg -3'
miRNA:   3'- -CGCAGU-CCACaa-------------CGGCGCUCG----UCCAG- -5'
13944 3' -57.1 NC_003521.1 + 218740 0.69 0.812561
Target:  5'- gGCGUCGGGacgGUcccccaUGCUGCGuucGCGGGcUCg -3'
miRNA:   3'- -CGCAGUCCa--CA------ACGGCGCu--CGUCC-AG- -5'
13944 3' -57.1 NC_003521.1 + 55370 0.66 0.938574
Target:  5'- cGCGUCucgccGGGUGcggaggUGaUCGcCGAGCGGGUg -3'
miRNA:   3'- -CGCAG-----UCCACa-----AC-GGC-GCUCGUCCAg -5'
13944 3' -57.1 NC_003521.1 + 75612 0.75 0.507621
Target:  5'- aGCGUCAGGUGguagucGUCGCGGGCcgccGUCa -3'
miRNA:   3'- -CGCAGUCCACaa----CGGCGCUCGuc--CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.