miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13945 5' -59.3 NC_003521.1 + 5643 0.69 0.721772
Target:  5'- aACGGaCCCacauGGcgGCGGAGGGuGggGGg -3'
miRNA:   3'- cUGCC-GGGg---CCuuUGCCUCCC-CuuCU- -5'
13945 5' -59.3 NC_003521.1 + 119731 0.72 0.558844
Target:  5'- gGAUGGCCCCGGcc-CGGAagaugaacucgGGGuGAAGAu -3'
miRNA:   3'- -CUGCCGGGGCCuuuGCCU-----------CCC-CUUCU- -5'
13945 5' -59.3 NC_003521.1 + 238459 0.72 0.558844
Target:  5'- gGGCGGCCUCGGcGGGCGGGGcGGAGa- -3'
miRNA:   3'- -CUGCCGGGGCC-UUUGCCUCcCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 43644 0.71 0.635723
Target:  5'- cGGCGGCCgccgCCGGAGAgcagagaGGAGGagaGGAGGAg -3'
miRNA:   3'- -CUGCCGG----GGCCUUUg------CCUCC---CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 149680 0.7 0.645389
Target:  5'- cGugGGCCCCgccgGGAAGCuGAGGuGGAGc- -3'
miRNA:   3'- -CugCCGGGG----CCUUUGcCUCC-CCUUcu -5'
13945 5' -59.3 NC_003521.1 + 13836 0.7 0.655045
Target:  5'- gGAaaGCaCCUGGAAugugacgacCGGAGGGGAGGAu -3'
miRNA:   3'- -CUgcCG-GGGCCUUu--------GCCUCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 131098 0.7 0.692481
Target:  5'- --gGGCUCCGGAcGGCGGGGcggcgcggcugccGGGAAGGg -3'
miRNA:   3'- cugCCGGGGCCU-UUGCCUC-------------CCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 223485 0.7 0.693434
Target:  5'- cACGGCCCgGGAggUGGGGcGGAu-- -3'
miRNA:   3'- cUGCCGGGgCCUuuGCCUCcCCUucu -5'
13945 5' -59.3 NC_003521.1 + 98976 0.7 0.693434
Target:  5'- cGGCGGCgCCUuuaGGAGGCGucAGGGGAGGu -3'
miRNA:   3'- -CUGCCG-GGG---CCUUUGCc-UCCCCUUCu -5'
13945 5' -59.3 NC_003521.1 + 170521 0.72 0.539965
Target:  5'- uGACGGCgugugaCGGGGACGGGGGGcAGGAg -3'
miRNA:   3'- -CUGCCGgg----GCCUUUGCCUCCCcUUCU- -5'
13945 5' -59.3 NC_003521.1 + 135251 0.73 0.521307
Target:  5'- -cUGGCCUCGGAugcucuGCGaGuAGGGGAGGAg -3'
miRNA:   3'- cuGCCGGGGCCUu-----UGC-C-UCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 91981 0.73 0.502904
Target:  5'- cGGCGGCCgauCCGGcgcGAACGGAGcGGGAGc- -3'
miRNA:   3'- -CUGCCGG---GGCC---UUUGCCUC-CCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 18091 0.81 0.192821
Target:  5'- cGACGGCCgCGGGGACGGAGGaGGuagcgguGGAa -3'
miRNA:   3'- -CUGCCGGgGCCUUUGCCUCC-CCu------UCU- -5'
13945 5' -59.3 NC_003521.1 + 71417 0.8 0.208335
Target:  5'- cGGCGGCCCCGaaccugacagaggacGAGGCGGggaucgcGGGGGAAGAc -3'
miRNA:   3'- -CUGCCGGGGC---------------CUUUGCC-------UCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 4227 0.78 0.265575
Target:  5'- -cCGGCCCCGGGAGgaGGAccgagacGGGGAGGAg -3'
miRNA:   3'- cuGCCGGGGCCUUUg-CCU-------CCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 164808 0.75 0.391455
Target:  5'- gGACGaUCCCGGAGcgcccGCGGGGGaGGAGGAa -3'
miRNA:   3'- -CUGCcGGGGCCUU-----UGCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 216724 0.75 0.399451
Target:  5'- uGGCGG-CCCGGAuuGGCGGAGaGGGGAuGAg -3'
miRNA:   3'- -CUGCCgGGGCCU--UUGCCUC-CCCUU-CU- -5'
13945 5' -59.3 NC_003521.1 + 130797 0.74 0.440951
Target:  5'- aGACGGCCaCCaaGGAGGaGGAGGGGGAa- -3'
miRNA:   3'- -CUGCCGG-GG--CCUUUgCCUCCCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 120941 0.74 0.440951
Target:  5'- cGGCGGCUCCGGcGAGgGGcAGGGGgcGGg -3'
miRNA:   3'- -CUGCCGGGGCC-UUUgCC-UCCCCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 111370 0.73 0.484791
Target:  5'- -cCGGCgCCGGGacuagcggcGACGGAGGGGAc-- -3'
miRNA:   3'- cuGCCGgGGCCU---------UUGCCUCCCCUucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.