miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13945 5' -59.3 NC_003521.1 + 14076 1.09 0.002726
Target:  5'- cGACGGCCCCGGAAACGGAGGGGAAGAg -3'
miRNA:   3'- -CUGCCGGGGCCUUUGCCUCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 74150 0.72 0.577904
Target:  5'- cACGGCCUugCGGAucuCGGgcGGGGGGAGGc -3'
miRNA:   3'- cUGCCGGG--GCCUuu-GCC--UCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 120535 0.71 0.635723
Target:  5'- cGGCGGUCCCGGGggAGCGcccGGGGAuaacGGAu -3'
miRNA:   3'- -CUGCCGGGGCCU--UUGCcu-CCCCU----UCU- -5'
13945 5' -59.3 NC_003521.1 + 34547 0.66 0.891565
Target:  5'- cACGGCCCUGGGcgaAAUcGAGGGacccGAGGGc -3'
miRNA:   3'- cUGCCGGGGCCU---UUGcCUCCC----CUUCU- -5'
13945 5' -59.3 NC_003521.1 + 203866 0.77 0.310638
Target:  5'- aGGCGGCCUCGGGggUGGAGaccGGaGAGGAg -3'
miRNA:   3'- -CUGCCGGGGCCUuuGCCUC---CC-CUUCU- -5'
13945 5' -59.3 NC_003521.1 + 1998 0.76 0.37578
Target:  5'- uGCGGUCgCGGGAggaACGcGAGGGGAGGGg -3'
miRNA:   3'- cUGCCGGgGCCUU---UGC-CUCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 153329 0.74 0.432455
Target:  5'- --gGGCCCCGGcgGCGGAGGaGGccuGGGg -3'
miRNA:   3'- cugCCGGGGCCuuUGCCUCC-CCu--UCU- -5'
13945 5' -59.3 NC_003521.1 + 43817 0.74 0.449542
Target:  5'- cGCGGCgCCGGcgGCGGGGagcGGGAGGGc -3'
miRNA:   3'- cUGCCGgGGCCuuUGCCUC---CCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 40025 0.74 0.475851
Target:  5'- uACGaGCCCCuGGAacagaGACGGAGGGGcgaaAGGAg -3'
miRNA:   3'- cUGC-CGGGG-CCU-----UUGCCUCCCC----UUCU- -5'
13945 5' -59.3 NC_003521.1 + 227190 0.72 0.568354
Target:  5'- cGGgGGgCCCGGc-GCGGAGGGGGccgcGGAg -3'
miRNA:   3'- -CUgCCgGGGCCuuUGCCUCCCCU----UCU- -5'
13945 5' -59.3 NC_003521.1 + 68666 0.73 0.502904
Target:  5'- cGCGGgaCCC-GAGGCGGAGGaGGAAGAc -3'
miRNA:   3'- cUGCCg-GGGcCUUUGCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 97692 0.74 0.475851
Target:  5'- cGACGGa---GGAGACGGAGGGGAGa- -3'
miRNA:   3'- -CUGCCggggCCUUUGCCUCCCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 200117 0.82 0.148224
Target:  5'- gGACgGGCCCCGGGGggacGCGGAGGaGGggGGc -3'
miRNA:   3'- -CUG-CCGGGGCCUU----UGCCUCC-CCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 171373 0.73 0.512071
Target:  5'- cGGCGGCCCUGaGGuacgcgguaacGGCGGGcGGGGAGGc -3'
miRNA:   3'- -CUGCCGGGGC-CU-----------UUGCCU-CCCCUUCu -5'
13945 5' -59.3 NC_003521.1 + 207422 0.79 0.245381
Target:  5'- aGACGGCCCUGGAAucuuaugggaacaagGCucgGGAGGGaGAAGAg -3'
miRNA:   3'- -CUGCCGGGGCCUU---------------UG---CCUCCC-CUUCU- -5'
13945 5' -59.3 NC_003521.1 + 92480 0.74 0.473185
Target:  5'- aGAgGGaCCCCGGGAcccgagcaggggcgGgGGAGGGGAGGc -3'
miRNA:   3'- -CUgCC-GGGGCCUU--------------UgCCUCCCCUUCu -5'
13945 5' -59.3 NC_003521.1 + 202857 0.72 0.558844
Target:  5'- gGGCGGCCUCGGcGGGCGGGGcGGAGa- -3'
miRNA:   3'- -CUGCCGGGGCC-UUUGCCUCcCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 92583 0.71 0.626055
Target:  5'- gGGCGGaugggaUCCGG-GACGGGGGuGGggGAg -3'
miRNA:   3'- -CUGCCg-----GGGCCuUUGCCUCC-CCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 85910 0.78 0.284568
Target:  5'- uGGCGGCCgCGGcuGcCGGGGGGGAGGu -3'
miRNA:   3'- -CUGCCGGgGCCuuU-GCCUCCCCUUCu -5'
13945 5' -59.3 NC_003521.1 + 154730 0.75 0.41082
Target:  5'- cGGCGGUgCCGGugaccaacagcguGCGGaAGGGGAAGAa -3'
miRNA:   3'- -CUGCCGgGGCCuu-----------UGCC-UCCCCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.