Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13945 | 5' | -59.3 | NC_003521.1 | + | 196566 | 0.7 | 0.655045 |
Target: 5'- aGGCGGCgcaggggaaUCGGAAcACGG-GGGGAGGAa -3' miRNA: 3'- -CUGCCGg--------GGCCUU-UGCCuCCCCUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 120535 | 0.71 | 0.635723 |
Target: 5'- cGGCGGUCCCGGGggAGCGcccGGGGAuaacGGAu -3' miRNA: 3'- -CUGCCGGGGCCU--UUGCcu-CCCCU----UCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 97692 | 0.74 | 0.475851 |
Target: 5'- cGACGGa---GGAGACGGAGGGGAGa- -3' miRNA: 3'- -CUGCCggggCCUUUGCCUCCCCUUcu -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 85910 | 0.78 | 0.284568 |
Target: 5'- uGGCGGCCgCGGcuGcCGGGGGGGAGGu -3' miRNA: 3'- -CUGCCGGgGCCuuU-GCCUCCCCUUCu -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 92822 | 0.68 | 0.776383 |
Target: 5'- gGugGGCgauUCCGGGuuGGgGGAGGGGAAc- -3' miRNA: 3'- -CugCCG---GGGCCU--UUgCCUCCCCUUcu -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 142863 | 0.69 | 0.712384 |
Target: 5'- aGCGGCgUgGGAGGCGGGGaGGcGggGGc -3' miRNA: 3'- cUGCCGgGgCCUUUGCCUC-CC-CuuCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 74150 | 0.72 | 0.577904 |
Target: 5'- cACGGCCUugCGGAucuCGGgcGGGGGGAGGc -3' miRNA: 3'- cUGCCGGG--GCCUuu-GCC--UCCCCUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 207422 | 0.79 | 0.245381 |
Target: 5'- aGACGGCCCUGGAAucuuaugggaacaagGCucgGGAGGGaGAAGAg -3' miRNA: 3'- -CUGCCGGGGCCUU---------------UG---CCUCCC-CUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 75332 | 0.7 | 0.683887 |
Target: 5'- cAUGGCgUCGGAGGCGGuGGGcAGGAu -3' miRNA: 3'- cUGCCGgGGCCUUUGCCuCCCcUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 200117 | 0.82 | 0.148224 |
Target: 5'- gGACgGGCCCCGGGGggacGCGGAGGaGGggGGc -3' miRNA: 3'- -CUG-CCGGGGCCUU----UGCCUCC-CCuuCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 92583 | 0.71 | 0.626055 |
Target: 5'- gGGCGGaugggaUCCGG-GACGGGGGuGGggGAg -3' miRNA: 3'- -CUGCCg-----GGGCCuUUGCCUCC-CCuuCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 91089 | 0.7 | 0.655045 |
Target: 5'- uGGgGGugccucccauCCCCGGGGAaGGGGGGGggGGc -3' miRNA: 3'- -CUgCC----------GGGGCCUUUgCCUCCCCuuCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 171373 | 0.73 | 0.512071 |
Target: 5'- cGGCGGCCCUGaGGuacgcgguaacGGCGGGcGGGGAGGc -3' miRNA: 3'- -CUGCCGGGGC-CU-----------UUGCCU-CCCCUUCu -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 40025 | 0.74 | 0.475851 |
Target: 5'- uACGaGCCCCuGGAacagaGACGGAGGGGcgaaAGGAg -3' miRNA: 3'- cUGC-CGGGG-CCU-----UUGCCUCCCC----UUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 153329 | 0.74 | 0.432455 |
Target: 5'- --gGGCCCCGGcgGCGGAGGaGGccuGGGg -3' miRNA: 3'- cugCCGGGGCCuuUGCCUCC-CCu--UCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 203866 | 0.77 | 0.310638 |
Target: 5'- aGGCGGCCUCGGGggUGGAGaccGGaGAGGAg -3' miRNA: 3'- -CUGCCGGGGCCUuuGCCUC---CC-CUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 1439 | 0.67 | 0.809763 |
Target: 5'- -cCGGgccucguaaaaccCCCCGGGggUGGguucacauAGGGGAGGAa -3' miRNA: 3'- cuGCC-------------GGGGCCUuuGCC--------UCCCCUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 11845 | 0.68 | 0.776383 |
Target: 5'- cGCGGgCCgCGGAGgugcuuGCGGuGaGGGAAGAc -3' miRNA: 3'- cUGCCgGG-GCCUU------UGCCuC-CCCUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 117880 | 0.68 | 0.758558 |
Target: 5'- uACGGCgCCGGGuagGACGGGGGcGGcGGu -3' miRNA: 3'- cUGCCGgGGCCU---UUGCCUCC-CCuUCu -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 50457 | 0.69 | 0.731091 |
Target: 5'- gGGCGGa-CCGGAca-GGAGGcGGAGGAg -3' miRNA: 3'- -CUGCCggGGCCUuugCCUCC-CCUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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