miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13945 5' -59.3 NC_003521.1 + 111370 0.73 0.484791
Target:  5'- -cCGGCgCCGGGacuagcggcGACGGAGGGGAc-- -3'
miRNA:   3'- cuGCCGgGGCCU---------UUGCCUCCCCUucu -5'
13945 5' -59.3 NC_003521.1 + 197523 0.73 0.501991
Target:  5'- aGGCGGCCgcugaCUGGGgggacgggggcaaAACGGAGGGGgcGAg -3'
miRNA:   3'- -CUGCCGG-----GGCCU-------------UUGCCUCCCCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 91981 0.73 0.502904
Target:  5'- cGGCGGCCgauCCGGcgcGAACGGAGcGGGAGc- -3'
miRNA:   3'- -CUGCCGG---GGCC---UUUGCCUC-CCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 68666 0.73 0.502904
Target:  5'- cGCGGgaCCC-GAGGCGGAGGaGGAAGAc -3'
miRNA:   3'- cUGCCg-GGGcCUUUGCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 171373 0.73 0.512071
Target:  5'- cGGCGGCCCUGaGGuacgcgguaacGGCGGGcGGGGAGGc -3'
miRNA:   3'- -CUGCCGGGGC-CU-----------UUGCCU-CCCCUUCu -5'
13945 5' -59.3 NC_003521.1 + 135251 0.73 0.521307
Target:  5'- -cUGGCCUCGGAugcucuGCGaGuAGGGGAGGAg -3'
miRNA:   3'- cuGCCGGGGCCUu-----UGC-C-UCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 170521 0.72 0.539965
Target:  5'- uGACGGCgugugaCGGGGACGGGGGGcAGGAg -3'
miRNA:   3'- -CUGCCGgg----GCCUUUGCCUCCCcUUCU- -5'
13945 5' -59.3 NC_003521.1 + 119731 0.72 0.558844
Target:  5'- gGAUGGCCCCGGcc-CGGAagaugaacucgGGGuGAAGAu -3'
miRNA:   3'- -CUGCCGGGGCCuuuGCCU-----------CCC-CUUCU- -5'
13945 5' -59.3 NC_003521.1 + 238459 0.72 0.558844
Target:  5'- gGGCGGCCUCGGcGGGCGGGGcGGAGa- -3'
miRNA:   3'- -CUGCCGGGGCC-UUUGCCUCcCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 202857 0.72 0.558844
Target:  5'- gGGCGGCCUCGGcGGGCGGGGcGGAGa- -3'
miRNA:   3'- -CUGCCGGGGCC-UUUGCCUCcCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 227190 0.72 0.568354
Target:  5'- cGGgGGgCCCGGc-GCGGAGGGGGccgcGGAg -3'
miRNA:   3'- -CUgCCgGGGCCuuUGCCUCCCCU----UCU- -5'
13945 5' -59.3 NC_003521.1 + 74150 0.72 0.577904
Target:  5'- cACGGCCUugCGGAucuCGGgcGGGGGGAGGc -3'
miRNA:   3'- cUGCCGGG--GCCUuu-GCC--UCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 92583 0.71 0.626055
Target:  5'- gGGCGGaugggaUCCGG-GACGGGGGuGGggGAg -3'
miRNA:   3'- -CUGCCg-----GGGCCuUUGCCUCC-CCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 120535 0.71 0.635723
Target:  5'- cGGCGGUCCCGGGggAGCGcccGGGGAuaacGGAu -3'
miRNA:   3'- -CUGCCGGGGCCU--UUGCcu-CCCCU----UCU- -5'
13945 5' -59.3 NC_003521.1 + 43644 0.71 0.635723
Target:  5'- cGGCGGCCgccgCCGGAGAgcagagaGGAGGagaGGAGGAg -3'
miRNA:   3'- -CUGCCGG----GGCCUUUg------CCUCC---CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 149680 0.7 0.645389
Target:  5'- cGugGGCCCCgccgGGAAGCuGAGGuGGAGc- -3'
miRNA:   3'- -CugCCGGGG----CCUUUGcCUCC-CCUUcu -5'
13945 5' -59.3 NC_003521.1 + 137499 0.7 0.645389
Target:  5'- -uCGGCCCCGGccgguGCGcGGGGGAucuGAa -3'
miRNA:   3'- cuGCCGGGGCCuu---UGCcUCCCCUu--CU- -5'
13945 5' -59.3 NC_003521.1 + 13836 0.7 0.655045
Target:  5'- gGAaaGCaCCUGGAAugugacgacCGGAGGGGAGGAu -3'
miRNA:   3'- -CUgcCG-GGGCCUUu--------GCCUCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 44128 0.7 0.655045
Target:  5'- cGACGGCCCgGGAGcCGGccGGGGc-- -3'
miRNA:   3'- -CUGCCGGGgCCUUuGCCucCCCUucu -5'
13945 5' -59.3 NC_003521.1 + 196566 0.7 0.655045
Target:  5'- aGGCGGCgcaggggaaUCGGAAcACGG-GGGGAGGAa -3'
miRNA:   3'- -CUGCCGg--------GGCCUU-UGCCuCCCCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.