miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13945 5' -59.3 NC_003521.1 + 44128 0.7 0.655045
Target:  5'- cGACGGCCCgGGAGcCGGccGGGGc-- -3'
miRNA:   3'- -CUGCCGGGgCCUUuGCCucCCCUucu -5'
13945 5' -59.3 NC_003521.1 + 47534 0.66 0.878501
Target:  5'- aGCGuGUCCCGGAGGucguccauguCGaGcGGGGAAGAc -3'
miRNA:   3'- cUGC-CGGGGCCUUU----------GC-CuCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 50457 0.69 0.731091
Target:  5'- gGGCGGa-CCGGAca-GGAGGcGGAGGAg -3'
miRNA:   3'- -CUGCCggGGCCUuugCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 59814 0.68 0.767524
Target:  5'- cGCGGCgCCGGAcGCGGgaaAGGGGu--- -3'
miRNA:   3'- cUGCCGgGGCCUuUGCC---UCCCCuucu -5'
13945 5' -59.3 NC_003521.1 + 62027 0.7 0.664684
Target:  5'- cGGCGGUCCCGGuGACGGGGaacGGcuGAa -3'
miRNA:   3'- -CUGCCGGGGCCuUUGCCUCc--CCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 68666 0.73 0.502904
Target:  5'- cGCGGgaCCC-GAGGCGGAGGaGGAAGAc -3'
miRNA:   3'- cUGCCg-GGGcCUUUGCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 70957 0.66 0.878501
Target:  5'- aGCGGCUCCGGAcggagccacgccGACGGAGau-GAGAa -3'
miRNA:   3'- cUGCCGGGGCCU------------UUGCCUCcccUUCU- -5'
13945 5' -59.3 NC_003521.1 + 71417 0.8 0.208335
Target:  5'- cGGCGGCCCCGaaccugacagaggacGAGGCGGggaucgcGGGGGAAGAc -3'
miRNA:   3'- -CUGCCGGGGC---------------CUUUGCC-------UCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 74150 0.72 0.577904
Target:  5'- cACGGCCUugCGGAucuCGGgcGGGGGGAGGc -3'
miRNA:   3'- cUGCCGGG--GCCUuu-GCC--UCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 75332 0.7 0.683887
Target:  5'- cAUGGCgUCGGAGGCGGuGGGcAGGAu -3'
miRNA:   3'- cUGCCGgGGCCUUUGCCuCCCcUUCU- -5'
13945 5' -59.3 NC_003521.1 + 75970 0.69 0.740333
Target:  5'- cGGCGGCUgUGGu-GCGGAcGGGGGcuGGAc -3'
miRNA:   3'- -CUGCCGGgGCCuuUGCCU-CCCCU--UCU- -5'
13945 5' -59.3 NC_003521.1 + 77307 0.66 0.864653
Target:  5'- uGugGGCCaugauGAUGGAGGGGuAGAg -3'
miRNA:   3'- -CugCCGGggccuUUGCCUCCCCuUCU- -5'
13945 5' -59.3 NC_003521.1 + 85910 0.78 0.284568
Target:  5'- uGGCGGCCgCGGcuGcCGGGGGGGAGGu -3'
miRNA:   3'- -CUGCCGGgGCCuuU-GCCUCCCCUUCu -5'
13945 5' -59.3 NC_003521.1 + 87345 0.69 0.740333
Target:  5'- aGACGGCCcgagCCGGAGcccgaggaggagGCcGAGGuGGAGGAc -3'
miRNA:   3'- -CUGCCGG----GGCCUU------------UGcCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 91089 0.7 0.655045
Target:  5'- uGGgGGugccucccauCCCCGGGGAaGGGGGGGggGGc -3'
miRNA:   3'- -CUgCC----------GGGGCCUUUgCCUCCCCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 91981 0.73 0.502904
Target:  5'- cGGCGGCCgauCCGGcgcGAACGGAGcGGGAGc- -3'
miRNA:   3'- -CUGCCGG---GGCC---UUUGCCUC-CCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 92480 0.74 0.473185
Target:  5'- aGAgGGaCCCCGGGAcccgagcaggggcgGgGGAGGGGAGGc -3'
miRNA:   3'- -CUgCC-GGGGCCUU--------------UgCCUCCCCUUCu -5'
13945 5' -59.3 NC_003521.1 + 92583 0.71 0.626055
Target:  5'- gGGCGGaugggaUCCGG-GACGGGGGuGGggGAg -3'
miRNA:   3'- -CUGCCg-----GGGCCuUUGCCUCC-CCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 92635 0.66 0.885132
Target:  5'- cGACGGCagCGGGcgAGCGGAcGGGcAGGAc -3'
miRNA:   3'- -CUGCCGggGCCU--UUGCCUcCCC-UUCU- -5'
13945 5' -59.3 NC_003521.1 + 92822 0.68 0.776383
Target:  5'- gGugGGCgauUCCGGGuuGGgGGAGGGGAAc- -3'
miRNA:   3'- -CugCCG---GGGCCU--UUgCCUCCCCUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.