miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13945 5' -59.3 NC_003521.1 + 200117 0.82 0.148224
Target:  5'- gGACgGGCCCCGGGGggacGCGGAGGaGGggGGc -3'
miRNA:   3'- -CUG-CCGGGGCCUU----UGCCUCC-CCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 197523 0.73 0.501991
Target:  5'- aGGCGGCCgcugaCUGGGgggacgggggcaaAACGGAGGGGgcGAg -3'
miRNA:   3'- -CUGCCGG-----GGCCU-------------UUGCCUCCCCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 196566 0.7 0.655045
Target:  5'- aGGCGGCgcaggggaaUCGGAAcACGG-GGGGAGGAa -3'
miRNA:   3'- -CUGCCGg--------GGCCUU-UGCCuCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 190200 0.68 0.764845
Target:  5'- cGGCGGCCCgcaCGauGAugauaaaucgcgguGGCGGAGGuGGAGGAc -3'
miRNA:   3'- -CUGCCGGG---GC--CU--------------UUGCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 179616 0.66 0.878501
Target:  5'- uACGGUUUCGGGAA---AGGGGAGGAc -3'
miRNA:   3'- cUGCCGGGGCCUUUgccUCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 175925 0.68 0.785127
Target:  5'- -cUGGCCCgaGGAGcCGGAGGaGGAcAGAc -3'
miRNA:   3'- cuGCCGGGg-CCUUuGCCUCC-CCU-UCU- -5'
13945 5' -59.3 NC_003521.1 + 173395 0.66 0.885132
Target:  5'- aGCGGCUCCGcAAACaccacccguGGAGGGGGc-- -3'
miRNA:   3'- cUGCCGGGGCcUUUG---------CCUCCCCUucu -5'
13945 5' -59.3 NC_003521.1 + 173346 0.66 0.857447
Target:  5'- uGACGGaCCUcuCGGGAA-GGAGgacGGGAGGAg -3'
miRNA:   3'- -CUGCC-GGG--GCCUUUgCCUC---CCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 171373 0.73 0.512071
Target:  5'- cGGCGGCCCUGaGGuacgcgguaacGGCGGGcGGGGAGGc -3'
miRNA:   3'- -CUGCCGGGGC-CU-----------UUGCCU-CCCCUUCu -5'
13945 5' -59.3 NC_003521.1 + 170521 0.72 0.539965
Target:  5'- uGACGGCgugugaCGGGGACGGGGGGcAGGAg -3'
miRNA:   3'- -CUGCCGgg----GCCUUUGCCUCCCcUUCU- -5'
13945 5' -59.3 NC_003521.1 + 168496 0.67 0.810592
Target:  5'- gGGCGGC----GAGACGGAGGcGGAGGAc -3'
miRNA:   3'- -CUGCCGgggcCUUUGCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 164808 0.75 0.391455
Target:  5'- gGACGaUCCCGGAGcgcccGCGGGGGaGGAGGAa -3'
miRNA:   3'- -CUGCcGGGGCCUU-----UGCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 157290 0.69 0.740333
Target:  5'- cGGCGGCCgCGu--ACGG-GGGGAGGc -3'
miRNA:   3'- -CUGCCGGgGCcuuUGCCuCCCCUUCu -5'
13945 5' -59.3 NC_003521.1 + 154730 0.75 0.41082
Target:  5'- cGGCGGUgCCGGugaccaacagcguGCGGaAGGGGAAGAa -3'
miRNA:   3'- -CUGCCGgGGCCuu-----------UGCC-UCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 153329 0.74 0.432455
Target:  5'- --gGGCCCCGGcgGCGGAGGaGGccuGGGg -3'
miRNA:   3'- cugCCGGGGCCuuUGCCUCC-CCu--UCU- -5'
13945 5' -59.3 NC_003521.1 + 150865 0.68 0.801396
Target:  5'- aACaGCCCaCGGGGACGugauaguGAGGaGGAGGAg -3'
miRNA:   3'- cUGcCGGG-GCCUUUGC-------CUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 150217 0.7 0.683887
Target:  5'- cACGGCCgaGGggGacggGGAGGGGGAcGAc -3'
miRNA:   3'- cUGCCGGggCCuuUg---CCUCCCCUU-CU- -5'
13945 5' -59.3 NC_003521.1 + 149680 0.7 0.645389
Target:  5'- cGugGGCCCCgccgGGAAGCuGAGGuGGAGc- -3'
miRNA:   3'- -CugCCGGGG----CCUUUGcCUCC-CCUUcu -5'
13945 5' -59.3 NC_003521.1 + 148646 0.69 0.749491
Target:  5'- aACGGCCCCGagcuCGGcGGGGAuGGc -3'
miRNA:   3'- cUGCCGGGGCcuuuGCCuCCCCUuCU- -5'
13945 5' -59.3 NC_003521.1 + 142863 0.69 0.712384
Target:  5'- aGCGGCgUgGGAGGCGGGGaGGcGggGGc -3'
miRNA:   3'- cUGCCGgGgCCUUUGCCUC-CC-CuuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.