miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13945 5' -59.3 NC_003521.1 + 240569 0.66 0.864653
Target:  5'- --gGGUCCCGGGG--GGuGGGGggGu -3'
miRNA:   3'- cugCCGGGGCCUUugCCuCCCCuuCu -5'
13945 5' -59.3 NC_003521.1 + 238459 0.72 0.558844
Target:  5'- gGGCGGCCUCGGcGGGCGGGGcGGAGa- -3'
miRNA:   3'- -CUGCCGGGGCC-UUUGCCUCcCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 233116 0.67 0.850058
Target:  5'- cGCGGCCgggaGGGuccgcGGCGGcGGGGGAGGu -3'
miRNA:   3'- cUGCCGGgg--CCU-----UUGCCuCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 227450 0.66 0.857447
Target:  5'- -cUGGgCUgGGAAgggcgGCGGAGGcGGGAGAa -3'
miRNA:   3'- cuGCCgGGgCCUU-----UGCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 227190 0.72 0.568354
Target:  5'- cGGgGGgCCCGGc-GCGGAGGGGGccgcGGAg -3'
miRNA:   3'- -CUgCCgGGGCCuuUGCCUCCCCU----UCU- -5'
13945 5' -59.3 NC_003521.1 + 224337 0.66 0.878501
Target:  5'- cGCGcGCCcgCCGGAGGacgaGGAGGGugacGAAGAg -3'
miRNA:   3'- cUGC-CGG--GGCCUUUg---CCUCCC----CUUCU- -5'
13945 5' -59.3 NC_003521.1 + 224201 0.67 0.834758
Target:  5'- uACGGCCauCUGGA---GGAGGuGGAGGAc -3'
miRNA:   3'- cUGCCGG--GGCCUuugCCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 223859 0.67 0.818801
Target:  5'- --aGGUCUCGGAGGCcGAGGuGGAGGc -3'
miRNA:   3'- cugCCGGGGCCUUUGcCUCC-CCUUCu -5'
13945 5' -59.3 NC_003521.1 + 223485 0.7 0.693434
Target:  5'- cACGGCCCgGGAggUGGGGcGGAu-- -3'
miRNA:   3'- cUGCCGGGgCCUuuGCCUCcCCUucu -5'
13945 5' -59.3 NC_003521.1 + 221668 0.67 0.850058
Target:  5'- aGACGGgaCgUGGguACGGAGGGuGAGAa -3'
miRNA:   3'- -CUGCCg-GgGCCuuUGCCUCCCcUUCU- -5'
13945 5' -59.3 NC_003521.1 + 218092 0.68 0.776383
Target:  5'- cGGCGGCgCCGGuGACGauGAGGGcGuAGAg -3'
miRNA:   3'- -CUGCCGgGGCCuUUGC--CUCCC-CuUCU- -5'
13945 5' -59.3 NC_003521.1 + 217053 0.66 0.864653
Target:  5'- cGCGGCuCCUGGcgugaucACGGGaGGGggGAa -3'
miRNA:   3'- cUGCCG-GGGCCuu-----UGCCUcCCCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 216724 0.75 0.399451
Target:  5'- uGGCGG-CCCGGAuuGGCGGAGaGGGGAuGAg -3'
miRNA:   3'- -CUGCCgGGGCCU--UUGCCUC-CCCUU-CU- -5'
13945 5' -59.3 NC_003521.1 + 211121 0.67 0.818801
Target:  5'- --gGGCCCUacgccgguGGucugGACGGAGGGaGggGAc -3'
miRNA:   3'- cugCCGGGG--------CCu---UUGCCUCCC-CuuCU- -5'
13945 5' -59.3 NC_003521.1 + 207422 0.79 0.245381
Target:  5'- aGACGGCCCUGGAAucuuaugggaacaagGCucgGGAGGGaGAAGAg -3'
miRNA:   3'- -CUGCCGGGGCCUU---------------UG---CCUCCC-CUUCU- -5'
13945 5' -59.3 NC_003521.1 + 203866 0.77 0.310638
Target:  5'- aGGCGGCCUCGGGggUGGAGaccGGaGAGGAg -3'
miRNA:   3'- -CUGCCGGGGCCUuuGCCUC---CC-CUUCU- -5'
13945 5' -59.3 NC_003521.1 + 203668 0.67 0.818801
Target:  5'- cGACGGCCUgGGAGGCGuGGccGGGAccuGAg -3'
miRNA:   3'- -CUGCCGGGgCCUUUGCcUC--CCCUu--CU- -5'
13945 5' -59.3 NC_003521.1 + 203329 0.66 0.891565
Target:  5'- cGCGGgCCCGaAAACGccGGGGGGcAGAc -3'
miRNA:   3'- cUGCCgGGGCcUUUGC--CUCCCCuUCU- -5'
13945 5' -59.3 NC_003521.1 + 202857 0.72 0.558844
Target:  5'- gGGCGGCCUCGGcGGGCGGGGcGGAGa- -3'
miRNA:   3'- -CUGCCGGGGCC-UUUGCCUCcCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 200746 0.66 0.864653
Target:  5'- --gGGUCCCGGGG--GGuGGGGggGu -3'
miRNA:   3'- cugCCGGGGCCUUugCCuCCCCuuCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.