Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13945 | 5' | -59.3 | NC_003521.1 | + | 224337 | 0.66 | 0.878501 |
Target: 5'- cGCGcGCCcgCCGGAGGacgaGGAGGGugacGAAGAg -3' miRNA: 3'- cUGC-CGG--GGCCUUUg---CCUCCC----CUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 127508 | 0.67 | 0.810592 |
Target: 5'- gGAUGGCCaCCaGGuuGCGGuAGuGGAAGAg -3' miRNA: 3'- -CUGCCGG-GG-CCuuUGCC-UCcCCUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 141382 | 0.67 | 0.841728 |
Target: 5'- cGCGGUgCCCGauGAcgacagcAACGGAGGGGAAc- -3' miRNA: 3'- cUGCCG-GGGC--CU-------UUGCCUCCCCUUcu -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 26095 | 0.67 | 0.818801 |
Target: 5'- aGACGGCUCCGGAGuCGGccAGGuaGAGu -3' miRNA: 3'- -CUGCCGGGGCCUUuGCC--UCCccUUCu -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 31011 | 0.67 | 0.830038 |
Target: 5'- cGACGGCgCCGGcgaGGACgcguucgugguggugGGGGGuGGGAGGa -3' miRNA: 3'- -CUGCCGgGGCC---UUUG---------------CCUCC-CCUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 168496 | 0.67 | 0.810592 |
Target: 5'- gGGCGGC----GAGACGGAGGcGGAGGAc -3' miRNA: 3'- -CUGCCGgggcCUUUGCCUCC-CCUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 233116 | 0.67 | 0.850058 |
Target: 5'- cGCGGCCgggaGGGuccgcGGCGGcGGGGGAGGu -3' miRNA: 3'- cUGCCGGgg--CCU-----UUGCCuCCCCUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 224201 | 0.67 | 0.834758 |
Target: 5'- uACGGCCauCUGGA---GGAGGuGGAGGAc -3' miRNA: 3'- cUGCCGG--GGCCUuugCCUCC-CCUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 203668 | 0.67 | 0.818801 |
Target: 5'- cGACGGCCUgGGAGGCGuGGccGGGAccuGAg -3' miRNA: 3'- -CUGCCGGGgCCUUUGCcUC--CCCUu--CU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 30759 | 0.67 | 0.841727 |
Target: 5'- cAUGGCUuaCUGGAaacugcuggugguGACGGAGGGGcAGGu -3' miRNA: 3'- cUGCCGG--GGCCU-------------UUGCCUCCCCuUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 221668 | 0.67 | 0.850058 |
Target: 5'- aGACGGgaCgUGGguACGGAGGGuGAGAa -3' miRNA: 3'- -CUGCCg-GgGCCuuUGCCUCCCcUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 211121 | 0.67 | 0.818801 |
Target: 5'- --gGGCCCUacgccgguGGucugGACGGAGGGaGggGAc -3' miRNA: 3'- cugCCGGGG--------CCu---UUGCCUCCC-CuuCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 1439 | 0.67 | 0.809763 |
Target: 5'- -cCGGgccucguaaaaccCCCCGGGggUGGguucacauAGGGGAGGAa -3' miRNA: 3'- cuGCC-------------GGGGCCUuuGCC--------UCCCCUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 223859 | 0.67 | 0.818801 |
Target: 5'- --aGGUCUCGGAGGCcGAGGuGGAGGc -3' miRNA: 3'- cugCCGGGGCCUUUGcCUCC-CCUUCu -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 218092 | 0.68 | 0.776383 |
Target: 5'- cGGCGGCgCCGGuGACGauGAGGGcGuAGAg -3' miRNA: 3'- -CUGCCGgGGCCuUUGC--CUCCC-CuUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 150865 | 0.68 | 0.801396 |
Target: 5'- aACaGCCCaCGGGGACGugauaguGAGGaGGAGGAg -3' miRNA: 3'- cUGcCGGG-GCCUUUGC-------CUCC-CCUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 190200 | 0.68 | 0.764845 |
Target: 5'- cGGCGGCCCgcaCGauGAugauaaaucgcgguGGCGGAGGuGGAGGAc -3' miRNA: 3'- -CUGCCGGG---GC--CU--------------UUGCCUCC-CCUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 11845 | 0.68 | 0.776383 |
Target: 5'- cGCGGgCCgCGGAGgugcuuGCGGuGaGGGAAGAc -3' miRNA: 3'- cUGCCgGG-GCCUU------UGCCuC-CCCUUCU- -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 92822 | 0.68 | 0.776383 |
Target: 5'- gGugGGCgauUCCGGGuuGGgGGAGGGGAAc- -3' miRNA: 3'- -CugCCG---GGGCCU--UUgCCUCCCCUUcu -5' |
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13945 | 5' | -59.3 | NC_003521.1 | + | 59814 | 0.68 | 0.767524 |
Target: 5'- cGCGGCgCCGGAcGCGGgaaAGGGGu--- -3' miRNA: 3'- cUGCCGgGGCCUuUGCC---UCCCCuucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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