miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13945 5' -59.3 NC_003521.1 + 97692 0.74 0.475851
Target:  5'- cGACGGa---GGAGACGGAGGGGAGa- -3'
miRNA:   3'- -CUGCCggggCCUUUGCCUCCCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 98976 0.7 0.693434
Target:  5'- cGGCGGCgCCUuuaGGAGGCGucAGGGGAGGu -3'
miRNA:   3'- -CUGCCG-GGG---CCUUUGCc-UCCCCUUCu -5'
13945 5' -59.3 NC_003521.1 + 105812 0.66 0.878501
Target:  5'- cACGGUgCCCGGcagccAGAUGGuGGGGcGGAu -3'
miRNA:   3'- cUGCCG-GGGCC-----UUUGCCuCCCCuUCU- -5'
13945 5' -59.3 NC_003521.1 + 111187 0.66 0.871673
Target:  5'- cGACGGCgCCGcGGACGGuGGGcuGGGc -3'
miRNA:   3'- -CUGCCGgGGCcUUUGCCuCCCcuUCU- -5'
13945 5' -59.3 NC_003521.1 + 111370 0.73 0.484791
Target:  5'- -cCGGCgCCGGGacuagcggcGACGGAGGGGAc-- -3'
miRNA:   3'- cuGCCGgGGCCU---------UUGCCUCCCCUucu -5'
13945 5' -59.3 NC_003521.1 + 113360 0.66 0.891565
Target:  5'- gGACGGgC-CGGggGC-GAGGaGGAGGGu -3'
miRNA:   3'- -CUGCCgGgGCCuuUGcCUCC-CCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 117880 0.68 0.758558
Target:  5'- uACGGCgCCGGGuagGACGGGGGcGGcGGu -3'
miRNA:   3'- cUGCCGgGGCCU---UUGCCUCC-CCuUCu -5'
13945 5' -59.3 NC_003521.1 + 119357 0.66 0.871673
Target:  5'- cGGCGaGCUgCCGuuGGAAgGcGAGGGGAAGAa -3'
miRNA:   3'- -CUGC-CGG-GGC--CUUUgC-CUCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 119731 0.72 0.558844
Target:  5'- gGAUGGCCCCGGcc-CGGAagaugaacucgGGGuGAAGAu -3'
miRNA:   3'- -CUGCCGGGGCCuuuGCCU-----------CCC-CUUCU- -5'
13945 5' -59.3 NC_003521.1 + 120535 0.71 0.635723
Target:  5'- cGGCGGUCCCGGGggAGCGcccGGGGAuaacGGAu -3'
miRNA:   3'- -CUGCCGGGGCCU--UUGCcu-CCCCU----UCU- -5'
13945 5' -59.3 NC_003521.1 + 120941 0.74 0.440951
Target:  5'- cGGCGGCUCCGGcGAGgGGcAGGGGgcGGg -3'
miRNA:   3'- -CUGCCGGGGCC-UUUgCC-UCCCCuuCU- -5'
13945 5' -59.3 NC_003521.1 + 127508 0.67 0.810592
Target:  5'- gGAUGGCCaCCaGGuuGCGGuAGuGGAAGAg -3'
miRNA:   3'- -CUGCCGG-GG-CCuuUGCC-UCcCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 130797 0.74 0.440951
Target:  5'- aGACGGCCaCCaaGGAGGaGGAGGGGGAa- -3'
miRNA:   3'- -CUGCCGG-GG--CCUUUgCCUCCCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 131098 0.7 0.692481
Target:  5'- --gGGCUCCGGAcGGCGGGGcggcgcggcugccGGGAAGGg -3'
miRNA:   3'- cugCCGGGGCCU-UUGCCUC-------------CCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 135251 0.73 0.521307
Target:  5'- -cUGGCCUCGGAugcucuGCGaGuAGGGGAGGAg -3'
miRNA:   3'- cuGCCGGGGCCUu-----UGC-C-UCCCCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 137499 0.7 0.645389
Target:  5'- -uCGGCCCCGGccgguGCGcGGGGGAucuGAa -3'
miRNA:   3'- cuGCCGGGGCCuu---UGCcUCCCCUu--CU- -5'
13945 5' -59.3 NC_003521.1 + 140705 0.66 0.885132
Target:  5'- gGACGGCa-CGGAGGCcGGGGaGAAGAc -3'
miRNA:   3'- -CUGCCGggGCCUUUGcCUCCcCUUCU- -5'
13945 5' -59.3 NC_003521.1 + 141382 0.67 0.841728
Target:  5'- cGCGGUgCCCGauGAcgacagcAACGGAGGGGAAc- -3'
miRNA:   3'- cUGCCG-GGGC--CU-------UUGCCUCCCCUUcu -5'
13945 5' -59.3 NC_003521.1 + 142863 0.69 0.712384
Target:  5'- aGCGGCgUgGGAGGCGGGGaGGcGggGGc -3'
miRNA:   3'- cUGCCGgGgCCUUUGCCUC-CC-CuuCU- -5'
13945 5' -59.3 NC_003521.1 + 148646 0.69 0.749491
Target:  5'- aACGGCCCCGagcuCGGcGGGGAuGGc -3'
miRNA:   3'- cUGCCGGGGCcuuuGCCuCCCCUuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.