Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13946 | 3' | -54 | NC_003521.1 | + | 92125 | 0.69 | 0.93121 |
Target: 5'- cGCCGcCGuCCUGgUCCGCCGCc---- -3' miRNA: 3'- aUGGCuGC-GGACaAGGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 59869 | 0.69 | 0.908971 |
Target: 5'- cGCCGGgGCCg---CCGCCACUa--- -3' miRNA: 3'- aUGGCUgCGGacaaGGCGGUGAauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 239794 | 0.69 | 0.908971 |
Target: 5'- cGCCGACGaaugGUUCCGCUACg---- -3' miRNA: 3'- aUGGCUGCgga-CAAGGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 217599 | 0.69 | 0.914883 |
Target: 5'- gACCGGcCGCCg--UCCGCCACc---- -3' miRNA: 3'- aUGGCU-GCGGacaAGGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 218894 | 0.69 | 0.920561 |
Target: 5'- gGCCGugGCCgcuuaCCGCCGCg---- -3' miRNA: 3'- aUGGCugCGGacaa-GGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 74849 | 0.69 | 0.926004 |
Target: 5'- gGCCgcggGACGCCgcg-CCGCCGCUccGUCg -3' miRNA: 3'- aUGG----CUGCGGacaaGGCGGUGAa-UAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 28574 | 0.69 | 0.93121 |
Target: 5'- gGCCG-CGCCgggGUcgCUGCCGCUgcUCu -3' miRNA: 3'- aUGGCuGCGGa--CAa-GGCGGUGAauAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 97458 | 0.69 | 0.908971 |
Target: 5'- gACCGuCGUC-GUUgCCGCCGCUUcUCa -3' miRNA: 3'- aUGGCuGCGGaCAA-GGCGGUGAAuAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 120439 | 0.69 | 0.908971 |
Target: 5'- cACCGAUGCUcGcgUCCGCCGCa---- -3' miRNA: 3'- aUGGCUGCGGaCa-AGGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 201522 | 0.69 | 0.908971 |
Target: 5'- cGCCGACGaaugGUUCCGCUACg---- -3' miRNA: 3'- aUGGCUGCgga-CAAGGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 137972 | 0.69 | 0.908971 |
Target: 5'- aUGCCGACGUggugcgCUGUgUCCGCgCGCagGUCg -3' miRNA: 3'- -AUGGCUGCG------GACA-AGGCG-GUGaaUAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 60168 | 0.69 | 0.914883 |
Target: 5'- cGCCaACGCCUGgagCCGCUACa---- -3' miRNA: 3'- aUGGcUGCGGACaa-GGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 111658 | 0.69 | 0.920561 |
Target: 5'- cGCCGcACGCCg--UCUGCUACgugAUCg -3' miRNA: 3'- aUGGC-UGCGGacaAGGCGGUGaa-UAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 144176 | 0.69 | 0.926004 |
Target: 5'- cGCCGGCGCCgccugCCGCgCGCUg--- -3' miRNA: 3'- aUGGCUGCGGacaa-GGCG-GUGAauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 19079 | 0.69 | 0.93121 |
Target: 5'- cGCUGACGCUgucGUUCCGCUug--AUCa -3' miRNA: 3'- aUGGCUGCGGa--CAAGGCGGugaaUAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 226412 | 0.69 | 0.93121 |
Target: 5'- --aCGACGCCgaGUgCCGCCGCUg--- -3' miRNA: 3'- augGCUGCGGa-CAaGGCGGUGAauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 206842 | 0.7 | 0.889849 |
Target: 5'- aGCCGGgGCCUGUcgugccCCGUCGCccUAUCg -3' miRNA: 3'- aUGGCUgCGGACAa-----GGCGGUGa-AUAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 56015 | 0.7 | 0.883023 |
Target: 5'- gGCCG-CGCCUGUcgCUGCCGCc---- -3' miRNA: 3'- aUGGCuGCGGACAa-GGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 102115 | 0.7 | 0.875977 |
Target: 5'- gUACCGcCGCCUG--CUGCCGCUcuUCa -3' miRNA: 3'- -AUGGCuGCGGACaaGGCGGUGAauAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 6085 | 0.7 | 0.875977 |
Target: 5'- gGCCGguGCGgCggcGUUCCGCCACggcUAUCu -3' miRNA: 3'- aUGGC--UGCgGa--CAAGGCGGUGa--AUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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