Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13946 | 3' | -54 | NC_003521.1 | + | 115223 | 0.71 | 0.829388 |
Target: 5'- gACUGACGCCgcagcagCCGCCGCUgcgCg -3' miRNA: 3'- aUGGCUGCGGacaa---GGCGGUGAauaG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 117501 | 0.69 | 0.93121 |
Target: 5'- cGgCGGCGCCgGgagCCGCCGCggccGUCa -3' miRNA: 3'- aUgGCUGCGGaCaa-GGCGGUGaa--UAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 120439 | 0.69 | 0.908971 |
Target: 5'- cACCGAUGCUcGcgUCCGCCGCa---- -3' miRNA: 3'- aUGGCUGCGGaCa-AGGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 122236 | 0.7 | 0.889849 |
Target: 5'- gUGCCGGCGaCUGagcgCCGCCAC--GUCg -3' miRNA: 3'- -AUGGCUGCgGACaa--GGCGGUGaaUAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 124143 | 0.66 | 0.975989 |
Target: 5'- cGCCGcUGCCUccgCCGCCGCUg--- -3' miRNA: 3'- aUGGCuGCGGAcaaGGCGGUGAauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 125144 | 0.7 | 0.868716 |
Target: 5'- gGgCGACGCgCUGUgccugcugCCGCCGCUcuUCa -3' miRNA: 3'- aUgGCUGCG-GACAa-------GGCGGUGAauAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 127655 | 0.67 | 0.964527 |
Target: 5'- gACCacCGCCUGUggCCGCC-CUUcAUCa -3' miRNA: 3'- aUGGcuGCGGACAa-GGCGGuGAA-UAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 127806 | 0.67 | 0.97342 |
Target: 5'- gGCCGACgGCgUGcugCCGCCGCa---- -3' miRNA: 3'- aUGGCUG-CGgACaa-GGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 129570 | 0.66 | 0.984473 |
Target: 5'- -cCCGACGauggCUGcUCCGCCGCg---- -3' miRNA: 3'- auGGCUGCg---GACaAGGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 129770 | 0.7 | 0.883023 |
Target: 5'- cUACCG-CGCCUGUcCCGCgCACg---- -3' miRNA: 3'- -AUGGCuGCGGACAaGGCG-GUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 131152 | 0.66 | 0.982606 |
Target: 5'- gGCCGAuCGCa---UCCGCCGCUacGUCu -3' miRNA: 3'- aUGGCU-GCGgacaAGGCGGUGAa-UAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 132861 | 0.75 | 0.648663 |
Target: 5'- uUGCgGACGCCgacgCCGCCGCUUccAUCa -3' miRNA: 3'- -AUGgCUGCGGacaaGGCGGUGAA--UAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 133445 | 0.68 | 0.953733 |
Target: 5'- -cCCGAuCGCCgaggCCGCCACUgcuggUGUCc -3' miRNA: 3'- auGGCU-GCGGacaaGGCGGUGA-----AUAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 136071 | 0.72 | 0.78565 |
Target: 5'- cGCCG-CGCCUcccUCCGCCGCUgcUCc -3' miRNA: 3'- aUGGCuGCGGAca-AGGCGGUGAauAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 137067 | 0.68 | 0.94969 |
Target: 5'- -cCCGGCcCCUGcugucUUCCGCCACUacAUCu -3' miRNA: 3'- auGGCUGcGGAC-----AAGGCGGUGAa-UAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 137313 | 0.67 | 0.961147 |
Target: 5'- gGCCGGgcggUGCCUGagucagCCGCCGgUUAUUg -3' miRNA: 3'- aUGGCU----GCGGACaa----GGCGGUgAAUAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 137878 | 0.66 | 0.982606 |
Target: 5'- -cCCGAgCGCCUGgaCCGCgACgccUCg -3' miRNA: 3'- auGGCU-GCGGACaaGGCGgUGaauAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 137972 | 0.69 | 0.908971 |
Target: 5'- aUGCCGACGUggugcgCUGUgUCCGCgCGCagGUCg -3' miRNA: 3'- -AUGGCUGCG------GACA-AGGCG-GUGaaUAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 143757 | 0.77 | 0.537828 |
Target: 5'- cACCGAUGCCgcgUCUGCCACUUcgacAUCa -3' miRNA: 3'- aUGGCUGCGGacaAGGCGGUGAA----UAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 144176 | 0.69 | 0.926004 |
Target: 5'- cGCCGGCGCCgccugCCGCgCGCUg--- -3' miRNA: 3'- aUGGCUGCGGacaa-GGCG-GUGAauag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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