miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 3' -54 NC_003521.1 + 64542 0.73 0.738516
Target:  5'- cGCCGACGCCcg-UCUGCUGCUgcUCa -3'
miRNA:   3'- aUGGCUGCGGacaAGGCGGUGAauAG- -5'
13946 3' -54 NC_003521.1 + 73408 0.67 0.967695
Target:  5'- aGgCGGCGCCg---CCGCCGCUg--- -3'
miRNA:   3'- aUgGCUGCGGacaaGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 74207 0.7 0.868716
Target:  5'- -cCCGACGCCgucUUCUGCCACg---- -3'
miRNA:   3'- auGGCUGCGGac-AAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 74606 0.67 0.957551
Target:  5'- gGCCGgcGCGCCUcg-CCGCCGCg---- -3'
miRNA:   3'- aUGGC--UGCGGAcaaGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 74849 0.69 0.926004
Target:  5'- gGCCgcggGACGCCgcg-CCGCCGCUccGUCg -3'
miRNA:   3'- aUGG----CUGCGGacaaGGCGGUGAa-UAG- -5'
13946 3' -54 NC_003521.1 + 77974 0.68 0.945419
Target:  5'- cGCCGuCGCCaacaacgCCGCCACggcUGUCu -3'
miRNA:   3'- aUGGCuGCGGacaa---GGCGGUGa--AUAG- -5'
13946 3' -54 NC_003521.1 + 89022 0.66 0.980575
Target:  5'- cACCGGCGCCacggcggugaGUUCCucGCCGCUcAUg -3'
miRNA:   3'- aUGGCUGCGGa---------CAAGG--CGGUGAaUAg -5'
13946 3' -54 NC_003521.1 + 89444 0.67 0.961147
Target:  5'- cGCCGGC-CCgg-UUCGCCGCUcGUCu -3'
miRNA:   3'- aUGGCUGcGGacaAGGCGGUGAaUAG- -5'
13946 3' -54 NC_003521.1 + 92125 0.69 0.93121
Target:  5'- cGCCGcCGuCCUGgUCCGCCGCc---- -3'
miRNA:   3'- aUGGCuGC-GGACaAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 92226 0.66 0.984473
Target:  5'- cGCCGGguucCGCCcucgCCGCCACgggGUCc -3'
miRNA:   3'- aUGGCU----GCGGacaaGGCGGUGaa-UAG- -5'
13946 3' -54 NC_003521.1 + 92280 0.67 0.970658
Target:  5'- cACCGcCGCCg---CCGCCGCgccUCg -3'
miRNA:   3'- aUGGCuGCGGacaaGGCGGUGaauAG- -5'
13946 3' -54 NC_003521.1 + 97458 0.69 0.908971
Target:  5'- gACCGuCGUC-GUUgCCGCCGCUUcUCa -3'
miRNA:   3'- aUGGCuGCGGaCAA-GGCGGUGAAuAG- -5'
13946 3' -54 NC_003521.1 + 99886 0.72 0.812368
Target:  5'- gGCCGugGCgCUGcgCCGCCgggcGCUgcagGUCa -3'
miRNA:   3'- aUGGCugCG-GACaaGGCGG----UGAa---UAG- -5'
13946 3' -54 NC_003521.1 + 101763 0.72 0.803613
Target:  5'- gGCCG-CGUCUGg-CCGCCGCUgcUCg -3'
miRNA:   3'- aUGGCuGCGGACaaGGCGGUGAauAG- -5'
13946 3' -54 NC_003521.1 + 102115 0.7 0.875977
Target:  5'- gUACCGcCGCCUG--CUGCCGCUcuUCa -3'
miRNA:   3'- -AUGGCuGCGGACaaGGCGGUGAauAG- -5'
13946 3' -54 NC_003521.1 + 103951 0.72 0.78565
Target:  5'- cACCGGCGCCac--CCGCCGCgaGUCc -3'
miRNA:   3'- aUGGCUGCGGacaaGGCGGUGaaUAG- -5'
13946 3' -54 NC_003521.1 + 104156 0.66 0.982606
Target:  5'- -cCCGGCGCCUGUguggcuucuugcUCUGUCGCc---- -3'
miRNA:   3'- auGGCUGCGGACA------------AGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 111658 0.69 0.920561
Target:  5'- cGCCGcACGCCg--UCUGCUACgugAUCg -3'
miRNA:   3'- aUGGC-UGCGGacaAGGCGGUGaa-UAG- -5'
13946 3' -54 NC_003521.1 + 114232 0.66 0.982606
Target:  5'- gGCCGGcCGCCUGccgucugUCUGCCucCUccgUGUCg -3'
miRNA:   3'- aUGGCU-GCGGACa------AGGCGGu-GA---AUAG- -5'
13946 3' -54 NC_003521.1 + 114710 0.68 0.94969
Target:  5'- gGCUGACGUucucgcggguCUGgugCCGCCACagGUCu -3'
miRNA:   3'- aUGGCUGCG----------GACaa-GGCGGUGaaUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.