Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13946 | 3' | -54 | NC_003521.1 | + | 143757 | 0.77 | 0.537828 |
Target: 5'- cACCGAUGCCgcgUCUGCCACUUcgacAUCa -3' miRNA: 3'- aUGGCUGCGGacaAGGCGGUGAA----UAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 148897 | 0.76 | 0.577696 |
Target: 5'- gGCCGACGCCgaggaGcgCCGCCGCggcAUCg -3' miRNA: 3'- aUGGCUGCGGa----CaaGGCGGUGaa-UAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 221088 | 0.74 | 0.699108 |
Target: 5'- -cCCGACGCCgucaCCGCCACgcugGUCa -3' miRNA: 3'- auGGCUGCGGacaaGGCGGUGaa--UAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 64542 | 0.73 | 0.738516 |
Target: 5'- cGCCGACGCCcg-UCUGCUGCUgcUCa -3' miRNA: 3'- aUGGCUGCGGacaAGGCGGUGAauAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 103951 | 0.72 | 0.78565 |
Target: 5'- cACCGGCGCCac--CCGCCGCgaGUCc -3' miRNA: 3'- aUGGCUGCGGacaaGGCGGUGaaUAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 74207 | 0.7 | 0.868716 |
Target: 5'- -cCCGACGCCgucUUCUGCCACg---- -3' miRNA: 3'- auGGCUGCGGac-AAGGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 6085 | 0.7 | 0.875977 |
Target: 5'- gGCCGguGCGgCggcGUUCCGCCACggcUAUCu -3' miRNA: 3'- aUGGC--UGCgGa--CAAGGCGGUGa--AUAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 129770 | 0.7 | 0.883023 |
Target: 5'- cUACCG-CGCCUGUcCCGCgCACg---- -3' miRNA: 3'- -AUGGCuGCGGACAaGGCG-GUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 188148 | 0.7 | 0.883023 |
Target: 5'- cGCCGACGCUgccgGUgCCGCUGCUg--- -3' miRNA: 3'- aUGGCUGCGGa---CAaGGCGGUGAauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 13521 | 0.7 | 0.889849 |
Target: 5'- aACgGGCaugaGCCUGUUCCGCUACg---- -3' miRNA: 3'- aUGgCUG----CGGACAAGGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 60168 | 0.69 | 0.914883 |
Target: 5'- cGCCaACGCCUGgagCCGCUACa---- -3' miRNA: 3'- aUGGcUGCGGACaa-GGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 137972 | 0.69 | 0.908971 |
Target: 5'- aUGCCGACGUggugcgCUGUgUCCGCgCGCagGUCg -3' miRNA: 3'- -AUGGCUGCG------GACA-AGGCG-GUGaaUAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 201522 | 0.69 | 0.908971 |
Target: 5'- cGCCGACGaaugGUUCCGCUACg---- -3' miRNA: 3'- aUGGCUGCgga-CAAGGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 120439 | 0.69 | 0.908971 |
Target: 5'- cACCGAUGCUcGcgUCCGCCGCa---- -3' miRNA: 3'- aUGGCUGCGGaCa-AGGCGGUGaauag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 97458 | 0.69 | 0.908971 |
Target: 5'- gACCGuCGUC-GUUgCCGCCGCUUcUCa -3' miRNA: 3'- aUGGCuGCGGaCAA-GGCGGUGAAuAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 188198 | 0.7 | 0.895149 |
Target: 5'- gGCCGACGCaggaucacccgGUcCUGCCACUcGUCg -3' miRNA: 3'- aUGGCUGCGga---------CAaGGCGGUGAaUAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 122236 | 0.7 | 0.889849 |
Target: 5'- gUGCCGGCGaCUGagcgCCGCCAC--GUCg -3' miRNA: 3'- -AUGGCUGCgGACaa--GGCGGUGaaUAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 92226 | 0.66 | 0.984473 |
Target: 5'- cGCCGGguucCGCCcucgCCGCCACgggGUCc -3' miRNA: 3'- aUGGCU----GCGGacaaGGCGGUGaa-UAG- -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 32415 | 0.76 | 0.577696 |
Target: 5'- cGCgGGCGCCU--UCCGCCGCUUGg- -3' miRNA: 3'- aUGgCUGCGGAcaAGGCGGUGAAUag -5' |
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13946 | 3' | -54 | NC_003521.1 | + | 132861 | 0.75 | 0.648663 |
Target: 5'- uUGCgGACGCCgacgCCGCCGCUUccAUCa -3' miRNA: 3'- -AUGgCUGCGGacaaGGCGGUGAA--UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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