miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 3' -54 NC_003521.1 + 117501 0.69 0.93121
Target:  5'- cGgCGGCGCCgGgagCCGCCGCggccGUCa -3'
miRNA:   3'- aUgGCUGCGGaCaa-GGCGGUGaa--UAG- -5'
13946 3' -54 NC_003521.1 + 74849 0.69 0.926004
Target:  5'- gGCCgcggGACGCCgcg-CCGCCGCUccGUCg -3'
miRNA:   3'- aUGG----CUGCGGacaaGGCGGUGAa-UAG- -5'
13946 3' -54 NC_003521.1 + 56015 0.7 0.883023
Target:  5'- gGCCG-CGCCUGUcgCUGCCGCc---- -3'
miRNA:   3'- aUGGCuGCGGACAa-GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 99886 0.72 0.812368
Target:  5'- gGCCGugGCgCUGcgCCGCCgggcGCUgcagGUCa -3'
miRNA:   3'- aUGGCugCG-GACaaGGCGG----UGAa---UAG- -5'
13946 3' -54 NC_003521.1 + 127655 0.67 0.964527
Target:  5'- gACCacCGCCUGUggCCGCC-CUUcAUCa -3'
miRNA:   3'- aUGGcuGCGGACAa-GGCGGuGAA-UAG- -5'
13946 3' -54 NC_003521.1 + 77974 0.68 0.945419
Target:  5'- cGCCGuCGCCaacaacgCCGCCACggcUGUCu -3'
miRNA:   3'- aUGGCuGCGGacaa---GGCGGUGa--AUAG- -5'
13946 3' -54 NC_003521.1 + 217599 0.69 0.914883
Target:  5'- gACCGGcCGCCg--UCCGCCACc---- -3'
miRNA:   3'- aUGGCU-GCGGacaAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 101763 0.72 0.803613
Target:  5'- gGCCG-CGUCUGg-CCGCCGCUgcUCg -3'
miRNA:   3'- aUGGCuGCGGACaaGGCGGUGAauAG- -5'
13946 3' -54 NC_003521.1 + 218345 0.68 0.940917
Target:  5'- cACCGGCGCCg---CCGCCucGCUgugcuUCg -3'
miRNA:   3'- aUGGCUGCGGacaaGGCGG--UGAau---AG- -5'
13946 3' -54 NC_003521.1 + 192332 0.72 0.794704
Target:  5'- aGCCGACGCCUcacaaaCCGCCGCg---- -3'
miRNA:   3'- aUGGCUGCGGAcaa---GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 218894 0.69 0.920561
Target:  5'- gGCCGugGCCgcuuaCCGCCGCg---- -3'
miRNA:   3'- aUGGCugCGGacaa-GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 92125 0.69 0.93121
Target:  5'- cGCCGcCGuCCUGgUCCGCCGCc---- -3'
miRNA:   3'- aUGGCuGC-GGACaAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 239794 0.69 0.908971
Target:  5'- cGCCGACGaaugGUUCCGCUACg---- -3'
miRNA:   3'- aUGGCUGCgga-CAAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 206842 0.7 0.889849
Target:  5'- aGCCGGgGCCUGUcgugccCCGUCGCccUAUCg -3'
miRNA:   3'- aUGGCUgCGGACAa-----GGCGGUGa-AUAG- -5'
13946 3' -54 NC_003521.1 + 192713 0.71 0.861246
Target:  5'- aACCGGCGCCg---CCGCCAUg---- -3'
miRNA:   3'- aUGGCUGCGGacaaGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 32906 0.72 0.812368
Target:  5'- cGCCGuCGUCUGcgCCGCCGCg---- -3'
miRNA:   3'- aUGGCuGCGGACaaGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 127806 0.67 0.97342
Target:  5'- gGCCGACgGCgUGcugCCGCCGCa---- -3'
miRNA:   3'- aUGGCUG-CGgACaa-GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 73408 0.67 0.967695
Target:  5'- aGgCGGCGCCg---CCGCCGCUg--- -3'
miRNA:   3'- aUgGCUGCGGacaaGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 38471 0.68 0.953733
Target:  5'- cAUCGGCGCCaucgUCCGCUACaucGUCg -3'
miRNA:   3'- aUGGCUGCGGaca-AGGCGGUGaa-UAG- -5'
13946 3' -54 NC_003521.1 + 46895 0.68 0.945419
Target:  5'- cGCCGACGCCgucuaCCGCCugGCUgaggacGUCg -3'
miRNA:   3'- aUGGCUGCGGacaa-GGCGG--UGAa-----UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.