miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 3' -54 NC_003521.1 + 14499 1.09 0.006634
Target:  5'- gUACCGACGCCUGUUCCGCCACUUAUCg -3'
miRNA:   3'- -AUGGCUGCGGACAAGGCGGUGAAUAG- -5'
13946 3' -54 NC_003521.1 + 59869 0.69 0.908971
Target:  5'- cGCCGGgGCCg---CCGCCACUa--- -3'
miRNA:   3'- aUGGCUgCGGacaaGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 217599 0.69 0.914883
Target:  5'- gACCGGcCGCCg--UCCGCCACc---- -3'
miRNA:   3'- aUGGCU-GCGGacaAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 92226 0.66 0.984473
Target:  5'- cGCCGGguucCGCCcucgCCGCCACgggGUCc -3'
miRNA:   3'- aUGGCU----GCGGacaaGGCGGUGaa-UAG- -5'
13946 3' -54 NC_003521.1 + 136071 0.72 0.78565
Target:  5'- cGCCG-CGCCUcccUCCGCCGCUgcUCc -3'
miRNA:   3'- aUGGCuGCGGAca-AGGCGGUGAauAG- -5'
13946 3' -54 NC_003521.1 + 192332 0.72 0.794704
Target:  5'- aGCCGACGCCUcacaaaCCGCCGCg---- -3'
miRNA:   3'- aUGGCUGCGGAcaa---GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 99886 0.72 0.812368
Target:  5'- gGCCGugGCgCUGcgCCGCCgggcGCUgcagGUCa -3'
miRNA:   3'- aUGGCugCG-GACaaGGCGG----UGAa---UAG- -5'
13946 3' -54 NC_003521.1 + 32906 0.72 0.812368
Target:  5'- cGCCGuCGUCUGcgCCGCCGCg---- -3'
miRNA:   3'- aUGGCuGCGGACaaGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 192713 0.71 0.861246
Target:  5'- aACCGGCGCCg---CCGCCAUg---- -3'
miRNA:   3'- aUGGCUGCGGacaaGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 153025 0.7 0.902826
Target:  5'- aGgCGACGCC-GUUCCGCgCGCUg--- -3'
miRNA:   3'- aUgGCUGCGGaCAAGGCG-GUGAauag -5'
13946 3' -54 NC_003521.1 + 102115 0.7 0.875977
Target:  5'- gUACCGcCGCCUG--CUGCCGCUcuUCa -3'
miRNA:   3'- -AUGGCuGCGGACaaGGCGGUGAauAG- -5'
13946 3' -54 NC_003521.1 + 115223 0.71 0.829388
Target:  5'- gACUGACGCCgcagcagCCGCCGCUgcgCg -3'
miRNA:   3'- aUGGCUGCGGacaa---GGCGGUGAauaG- -5'
13946 3' -54 NC_003521.1 + 32415 0.76 0.577696
Target:  5'- cGCgGGCGCCU--UCCGCCGCUUGg- -3'
miRNA:   3'- aUGgCUGCGGAcaAGGCGGUGAAUag -5'
13946 3' -54 NC_003521.1 + 56015 0.7 0.883023
Target:  5'- gGCCG-CGCCUGUcgCUGCCGCc---- -3'
miRNA:   3'- aUGGCuGCGGACAa-GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 132861 0.75 0.648663
Target:  5'- uUGCgGACGCCgacgCCGCCGCUUccAUCa -3'
miRNA:   3'- -AUGgCUGCGGacaaGGCGGUGAA--UAG- -5'
13946 3' -54 NC_003521.1 + 188534 0.72 0.820963
Target:  5'- --aCGACGCCU--UCCGUCGCUUcAUCa -3'
miRNA:   3'- augGCUGCGGAcaAGGCGGUGAA-UAG- -5'
13946 3' -54 NC_003521.1 + 206842 0.7 0.889849
Target:  5'- aGCCGGgGCCUGUcgugccCCGUCGCccUAUCg -3'
miRNA:   3'- aUGGCUgCGGACAa-----GGCGGUGa-AUAG- -5'
13946 3' -54 NC_003521.1 + 239794 0.69 0.908971
Target:  5'- cGCCGACGaaugGUUCCGCUACg---- -3'
miRNA:   3'- aUGGCUGCgga-CAAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 52599 0.73 0.738516
Target:  5'- gGCCGugGgCCUGggUCCGCCGCc---- -3'
miRNA:   3'- aUGGCugC-GGACa-AGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 101763 0.72 0.803613
Target:  5'- gGCCG-CGUCUGg-CCGCCGCUgcUCg -3'
miRNA:   3'- aUGGCuGCGGACaaGGCGGUGAauAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.