miRNA display CGI


Results 21 - 40 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 3' -54 NC_003521.1 + 173726 0.67 0.97342
Target:  5'- gUAUCGACGCCacuaCCGCCGg-UGUCa -3'
miRNA:   3'- -AUGGCUGCGGacaaGGCGGUgaAUAG- -5'
13946 3' -54 NC_003521.1 + 172583 0.66 0.982606
Target:  5'- gGCCGAgGCCUGcgCCaGCgGC--GUCa -3'
miRNA:   3'- aUGGCUgCGGACaaGG-CGgUGaaUAG- -5'
13946 3' -54 NC_003521.1 + 162642 0.68 0.936181
Target:  5'- -uCCGcACGCC-GUUUCGCCAUggAUCc -3'
miRNA:   3'- auGGC-UGCGGaCAAGGCGGUGaaUAG- -5'
13946 3' -54 NC_003521.1 + 153025 0.7 0.902826
Target:  5'- aGgCGACGCC-GUUCCGCgCGCUg--- -3'
miRNA:   3'- aUgGCUGCGGaCAAGGCG-GUGAauag -5'
13946 3' -54 NC_003521.1 + 148897 0.76 0.577696
Target:  5'- gGCCGACGCCgaggaGcgCCGCCGCggcAUCg -3'
miRNA:   3'- aUGGCUGCGGa----CaaGGCGGUGaa-UAG- -5'
13946 3' -54 NC_003521.1 + 144176 0.69 0.926004
Target:  5'- cGCCGGCGCCgccugCCGCgCGCUg--- -3'
miRNA:   3'- aUGGCUGCGGacaa-GGCG-GUGAauag -5'
13946 3' -54 NC_003521.1 + 143757 0.77 0.537828
Target:  5'- cACCGAUGCCgcgUCUGCCACUUcgacAUCa -3'
miRNA:   3'- aUGGCUGCGGacaAGGCGGUGAA----UAG- -5'
13946 3' -54 NC_003521.1 + 137972 0.69 0.908971
Target:  5'- aUGCCGACGUggugcgCUGUgUCCGCgCGCagGUCg -3'
miRNA:   3'- -AUGGCUGCG------GACA-AGGCG-GUGaaUAG- -5'
13946 3' -54 NC_003521.1 + 137878 0.66 0.982606
Target:  5'- -cCCGAgCGCCUGgaCCGCgACgccUCg -3'
miRNA:   3'- auGGCU-GCGGACaaGGCGgUGaauAG- -5'
13946 3' -54 NC_003521.1 + 137313 0.67 0.961147
Target:  5'- gGCCGGgcggUGCCUGagucagCCGCCGgUUAUUg -3'
miRNA:   3'- aUGGCU----GCGGACaa----GGCGGUgAAUAG- -5'
13946 3' -54 NC_003521.1 + 137067 0.68 0.94969
Target:  5'- -cCCGGCcCCUGcugucUUCCGCCACUacAUCu -3'
miRNA:   3'- auGGCUGcGGAC-----AAGGCGGUGAa-UAG- -5'
13946 3' -54 NC_003521.1 + 136071 0.72 0.78565
Target:  5'- cGCCG-CGCCUcccUCCGCCGCUgcUCc -3'
miRNA:   3'- aUGGCuGCGGAca-AGGCGGUGAauAG- -5'
13946 3' -54 NC_003521.1 + 133445 0.68 0.953733
Target:  5'- -cCCGAuCGCCgaggCCGCCACUgcuggUGUCc -3'
miRNA:   3'- auGGCU-GCGGacaaGGCGGUGA-----AUAG- -5'
13946 3' -54 NC_003521.1 + 132861 0.75 0.648663
Target:  5'- uUGCgGACGCCgacgCCGCCGCUUccAUCa -3'
miRNA:   3'- -AUGgCUGCGGacaaGGCGGUGAA--UAG- -5'
13946 3' -54 NC_003521.1 + 131152 0.66 0.982606
Target:  5'- gGCCGAuCGCa---UCCGCCGCUacGUCu -3'
miRNA:   3'- aUGGCU-GCGgacaAGGCGGUGAa-UAG- -5'
13946 3' -54 NC_003521.1 + 129770 0.7 0.883023
Target:  5'- cUACCG-CGCCUGUcCCGCgCACg---- -3'
miRNA:   3'- -AUGGCuGCGGACAaGGCG-GUGaauag -5'
13946 3' -54 NC_003521.1 + 129570 0.66 0.984473
Target:  5'- -cCCGACGauggCUGcUCCGCCGCg---- -3'
miRNA:   3'- auGGCUGCg---GACaAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 127806 0.67 0.97342
Target:  5'- gGCCGACgGCgUGcugCCGCCGCa---- -3'
miRNA:   3'- aUGGCUG-CGgACaa-GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 127655 0.67 0.964527
Target:  5'- gACCacCGCCUGUggCCGCC-CUUcAUCa -3'
miRNA:   3'- aUGGcuGCGGACAa-GGCGGuGAA-UAG- -5'
13946 3' -54 NC_003521.1 + 125144 0.7 0.868716
Target:  5'- gGgCGACGCgCUGUgccugcugCCGCCGCUcuUCa -3'
miRNA:   3'- aUgGCUGCG-GACAa-------GGCGGUGAauAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.