miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 3' -54 NC_003521.1 + 239794 0.69 0.908971
Target:  5'- cGCCGACGaaugGUUCCGCUACg---- -3'
miRNA:   3'- aUGGCUGCgga-CAAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 233082 0.67 0.967695
Target:  5'- cUGCCGcCGCC---UCCGCCGCUc--- -3'
miRNA:   3'- -AUGGCuGCGGacaAGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 226412 0.69 0.93121
Target:  5'- --aCGACGCCgaGUgCCGCCGCUg--- -3'
miRNA:   3'- augGCUGCGGa-CAaGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 224278 0.66 0.980575
Target:  5'- -cCCGAcCGCCgGgcCCGCCGCUg--- -3'
miRNA:   3'- auGGCU-GCGGaCaaGGCGGUGAauag -5'
13946 3' -54 NC_003521.1 + 221088 0.74 0.699108
Target:  5'- -cCCGACGCCgucaCCGCCACgcugGUCa -3'
miRNA:   3'- auGGCUGCGGacaaGGCGGUGaa--UAG- -5'
13946 3' -54 NC_003521.1 + 218894 0.69 0.920561
Target:  5'- gGCCGugGCCgcuuaCCGCCGCg---- -3'
miRNA:   3'- aUGGCugCGGacaa-GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 218345 0.68 0.940917
Target:  5'- cACCGGCGCCg---CCGCCucGCUgugcuUCg -3'
miRNA:   3'- aUGGCUGCGGacaaGGCGG--UGAau---AG- -5'
13946 3' -54 NC_003521.1 + 218296 0.66 0.982606
Target:  5'- cUGCgGACGCCg---CCGCCGCc---- -3'
miRNA:   3'- -AUGgCUGCGGacaaGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 217599 0.69 0.914883
Target:  5'- gACCGGcCGCCg--UCCGCCACc---- -3'
miRNA:   3'- aUGGCU-GCGGacaAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 211645 0.66 0.978372
Target:  5'- aGCCGGCGCCUGa-CgGCCuACUa--- -3'
miRNA:   3'- aUGGCUGCGGACaaGgCGG-UGAauag -5'
13946 3' -54 NC_003521.1 + 206842 0.7 0.889849
Target:  5'- aGCCGGgGCCUGUcgugccCCGUCGCccUAUCg -3'
miRNA:   3'- aUGGCUgCGGACAa-----GGCGGUGa-AUAG- -5'
13946 3' -54 NC_003521.1 + 203798 0.68 0.936181
Target:  5'- cGCCGACGaggacuCCUGUcgguccugacUCCGCCGCg---- -3'
miRNA:   3'- aUGGCUGC------GGACA----------AGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 201522 0.69 0.908971
Target:  5'- cGCCGACGaaugGUUCCGCUACg---- -3'
miRNA:   3'- aUGGCUGCgga-CAAGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 192713 0.71 0.861246
Target:  5'- aACCGGCGCCg---CCGCCAUg---- -3'
miRNA:   3'- aUGGCUGCGGacaaGGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 192332 0.72 0.794704
Target:  5'- aGCCGACGCCUcacaaaCCGCCGCg---- -3'
miRNA:   3'- aUGGCUGCGGAcaa---GGCGGUGaauag -5'
13946 3' -54 NC_003521.1 + 191053 0.66 0.984473
Target:  5'- gGCCGACGCucaguuCUGUUCCcGCgGCg---- -3'
miRNA:   3'- aUGGCUGCG------GACAAGG-CGgUGaauag -5'
13946 3' -54 NC_003521.1 + 190044 0.66 0.980575
Target:  5'- cGCCGAuCGaCCaGgaCCGCCGCgcgGUCu -3'
miRNA:   3'- aUGGCU-GC-GGaCaaGGCGGUGaa-UAG- -5'
13946 3' -54 NC_003521.1 + 188534 0.72 0.820963
Target:  5'- --aCGACGCCU--UCCGUCGCUUcAUCa -3'
miRNA:   3'- augGCUGCGGAcaAGGCGGUGAA-UAG- -5'
13946 3' -54 NC_003521.1 + 188198 0.7 0.895149
Target:  5'- gGCCGACGCaggaucacccgGUcCUGCCACUcGUCg -3'
miRNA:   3'- aUGGCUGCGga---------CAaGGCGGUGAaUAG- -5'
13946 3' -54 NC_003521.1 + 188148 0.7 0.883023
Target:  5'- cGCCGACGCUgccgGUgCCGCUGCUg--- -3'
miRNA:   3'- aUGGCUGCGGa---CAaGGCGGUGAauag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.