Results 21 - 40 of 63 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 156832 | 0.67 | 0.999997 |
Target: 5'- uGGAUGCGauggcggucgcUGGGCAggcuGAGCAcGUuGUCACa -3' miRNA: 3'- cCCUAUGC-----------AUCCGU----UUUGU-CA-UAGUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 80797 | 0.67 | 0.999997 |
Target: 5'- uGGGcucCGccGGCAAGGCGGUGggCACg -3' miRNA: 3'- -CCCuauGCauCCGUUUUGUCAUa-GUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 118681 | 0.67 | 0.999997 |
Target: 5'- cGGGAgGCGgcGGUAccgcugguggaGGGCAGgcUCAUg -3' miRNA: 3'- -CCCUaUGCauCCGU-----------UUUGUCauAGUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 155826 | 0.67 | 0.999997 |
Target: 5'- cGGGccUGCGUcaucgguuaccaGGGC---ACGGUGUCGCg -3' miRNA: 3'- -CCCu-AUGCA------------UCCGuuuUGUCAUAGUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 5717 | 0.67 | 0.999997 |
Target: 5'- cGGGGUuauguguACGgcccGGGCAcgGCGcGUGUCAUg -3' miRNA: 3'- -CCCUA-------UGCa---UCCGUuuUGU-CAUAGUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 80763 | 0.67 | 0.999997 |
Target: 5'- cGGAgcCGUGGGCGGcGCGGUGg--- -3' miRNA: 3'- cCCUauGCAUCCGUUuUGUCAUagug -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 67748 | 0.67 | 0.999997 |
Target: 5'- aGGGUGCGgucgaAGGCGAAGCccu-UCACc -3' miRNA: 3'- cCCUAUGCa----UCCGUUUUGucauAGUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 234229 | 0.67 | 0.999997 |
Target: 5'- uGGGAgGCGUGGGUA--GCGG-AUC-Cg -3' miRNA: 3'- -CCCUaUGCAUCCGUuuUGUCaUAGuG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 170534 | 0.67 | 0.999996 |
Target: 5'- cGGGG-ACGggGGGCAGGAgGGUuuauguacacagcgcGUCACc -3' miRNA: 3'- -CCCUaUGCa-UCCGUUUUgUCA---------------UAGUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 78821 | 0.67 | 0.999995 |
Target: 5'- gGGGGUGCGacaccGGCGccGAcACAGUcucAUCACg -3' miRNA: 3'- -CCCUAUGCau---CCGU--UU-UGUCA---UAGUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 77742 | 0.67 | 0.999995 |
Target: 5'- uGGGcgGCGUcugguagugguuGGGCAGGAUGuaGUCGCg -3' miRNA: 3'- -CCCuaUGCA------------UCCGUUUUGUcaUAGUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 166847 | 0.67 | 0.999995 |
Target: 5'- aGGAUACGcAGGCGGuggcgcGGCGGg--CGCa -3' miRNA: 3'- cCCUAUGCaUCCGUU------UUGUCauaGUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 103096 | 0.68 | 0.999993 |
Target: 5'- gGGGAUGCGaaggGGGC-GGAUAGga-CGCg -3' miRNA: 3'- -CCCUAUGCa---UCCGuUUUGUCauaGUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 75324 | 0.68 | 0.999993 |
Target: 5'- cGGAgGCgGUGGGCAGGAUcuGGUGcuccUCGCa -3' miRNA: 3'- cCCUaUG-CAUCCGUUUUG--UCAU----AGUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 66029 | 0.68 | 0.999993 |
Target: 5'- uGGGcgcugacagaaAUGC-UGGGCAAGACGGUAccCACc -3' miRNA: 3'- -CCC-----------UAUGcAUCCGUUUUGUCAUa-GUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 198081 | 0.68 | 0.999993 |
Target: 5'- cGGAUGCGUugugggGGGCGucuGACGGUGcUGCc -3' miRNA: 3'- cCCUAUGCA------UCCGUu--UUGUCAUaGUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 81924 | 0.68 | 0.999993 |
Target: 5'- aGGGGUACuUGGaGCG-GGCGGUgGUCACc -3' miRNA: 3'- -CCCUAUGcAUC-CGUuUUGUCA-UAGUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 225633 | 0.68 | 0.999987 |
Target: 5'- cGGGAUccaccACGUAGGUcugcGAAuuGGUGUCGu -3' miRNA: 3'- -CCCUA-----UGCAUCCG----UUUugUCAUAGUg -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 29818 | 0.68 | 0.999987 |
Target: 5'- cGGGGUGUGUcGGUggGugGGUcgCGCc -3' miRNA: 3'- -CCCUAUGCAuCCGuuUugUCAuaGUG- -5' |
|||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 11639 | 0.68 | 0.999984 |
Target: 5'- cGGGGUuguaguagacacaugGCGUGGGCGgguuacgugauuAGACGGUGUgGa -3' miRNA: 3'- -CCCUA---------------UGCAUCCGU------------UUUGUCAUAgUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home