miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 5' -45.5 NC_003521.1 + 77742 0.67 0.999995
Target:  5'- uGGGcgGCGUcugguagugguuGGGCAGGAUGuaGUCGCg -3'
miRNA:   3'- -CCCuaUGCA------------UCCGUUUUGUcaUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 78821 0.67 0.999995
Target:  5'- gGGGGUGCGacaccGGCGccGAcACAGUcucAUCACg -3'
miRNA:   3'- -CCCUAUGCau---CCGU--UU-UGUCA---UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 80763 0.67 0.999997
Target:  5'- cGGAgcCGUGGGCGGcGCGGUGg--- -3'
miRNA:   3'- cCCUauGCAUCCGUUuUGUCAUagug -5'
13946 5' -45.5 NC_003521.1 + 80797 0.67 0.999997
Target:  5'- uGGGcucCGccGGCAAGGCGGUGggCACg -3'
miRNA:   3'- -CCCuauGCauCCGUUUUGUCAUa-GUG- -5'
13946 5' -45.5 NC_003521.1 + 81924 0.68 0.999993
Target:  5'- aGGGGUACuUGGaGCG-GGCGGUgGUCACc -3'
miRNA:   3'- -CCCUAUGcAUC-CGUuUUGUCA-UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 92703 0.66 0.999999
Target:  5'- cGGGGUGCGgggAGGCuGGGgGGUGa--- -3'
miRNA:   3'- -CCCUAUGCa--UCCGuUUUgUCAUagug -5'
13946 5' -45.5 NC_003521.1 + 93014 0.73 0.996244
Target:  5'- cGGGAUguGCGUauacGGGCAGgcaGACGGUccggagGUCGCg -3'
miRNA:   3'- -CCCUA--UGCA----UCCGUU---UUGUCA------UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 99429 0.69 0.999954
Target:  5'- aGGGAca-GUAGGCcagcauGAAGCGGUAgggCGCc -3'
miRNA:   3'- -CCCUaugCAUCCG------UUUUGUCAUa--GUG- -5'
13946 5' -45.5 NC_003521.1 + 103096 0.68 0.999993
Target:  5'- gGGGAUGCGaaggGGGC-GGAUAGga-CGCg -3'
miRNA:   3'- -CCCUAUGCa---UCCGuUUUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 103546 0.67 0.999999
Target:  5'- aGGcGUGCGUGGGgAuGACGGggcccagGUCGCc -3'
miRNA:   3'- -CCcUAUGCAUCCgUuUUGUCa------UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 111223 0.68 0.999982
Target:  5'- cGGAaa-GUGGGCGAcACGG-GUCACa -3'
miRNA:   3'- cCCUaugCAUCCGUUuUGUCaUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 112183 0.66 1
Target:  5'- aGGGcgGCGUcgguacacAGGuCGAAGCGGgcggCGCg -3'
miRNA:   3'- -CCCuaUGCA--------UCC-GUUUUGUCaua-GUG- -5'
13946 5' -45.5 NC_003521.1 + 114996 0.76 0.984606
Target:  5'- uGGGGcACGUAGaGCAgcAGACAG-GUCACg -3'
miRNA:   3'- -CCCUaUGCAUC-CGU--UUUGUCaUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 118681 0.67 0.999997
Target:  5'- cGGGAgGCGgcGGUAccgcugguggaGGGCAGgcUCAUg -3'
miRNA:   3'- -CCCUaUGCauCCGU-----------UUUGUCauAGUG- -5'
13946 5' -45.5 NC_003521.1 + 124089 0.72 0.998706
Target:  5'- cGGGcccgacgGCGUGGGCGggAAGCAGcgcGUCGCu -3'
miRNA:   3'- -CCCua-----UGCAUCCGU--UUUGUCa--UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 131406 0.66 1
Target:  5'- cGGAUGCGaucGGCcGAGgGGUcgCGCu -3'
miRNA:   3'- cCCUAUGCau-CCGuUUUgUCAuaGUG- -5'
13946 5' -45.5 NC_003521.1 + 133834 0.69 0.999966
Target:  5'- cGGGAUgucgcucugACGUAGGCGcuGAUAGg--CGCu -3'
miRNA:   3'- -CCCUA---------UGCAUCCGUu-UUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 137619 0.66 1
Target:  5'- cGGAUGCGggaGGGCGGcuccAGCGGgccCGCg -3'
miRNA:   3'- cCCUAUGCa--UCCGUU----UUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 139123 0.66 1
Target:  5'- gGGGGUugGUugcAGGCcAAGCAGg----- -3'
miRNA:   3'- -CCCUAugCA---UCCGuUUUGUCauagug -5'
13946 5' -45.5 NC_003521.1 + 141360 0.71 0.999431
Target:  5'- cGGGUGCGgcGGCGGu-CGGUGaCGCg -3'
miRNA:   3'- cCCUAUGCauCCGUUuuGUCAUaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.