miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 5' -45.5 NC_003521.1 + 5717 0.67 0.999997
Target:  5'- cGGGGUuauguguACGgcccGGGCAcgGCGcGUGUCAUg -3'
miRNA:   3'- -CCCUA-------UGCa---UCCGUuuUGU-CAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 10664 0.7 0.999824
Target:  5'- -aGAUGCG-GGGCGAcGCGGUAUC-Ca -3'
miRNA:   3'- ccCUAUGCaUCCGUUuUGUCAUAGuG- -5'
13946 5' -45.5 NC_003521.1 + 11639 0.68 0.999984
Target:  5'- cGGGGUuguaguagacacaugGCGUGGGCGgguuacgugauuAGACGGUGUgGa -3'
miRNA:   3'- -CCCUA---------------UGCAUCCGU------------UUUGUCAUAgUg -5'
13946 5' -45.5 NC_003521.1 + 14460 1.14 0.025986
Target:  5'- uGGGAUACGUAGGCAAAACAGUAUCACu -3'
miRNA:   3'- -CCCUAUGCAUCCGUUUUGUCAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 15725 0.66 1
Target:  5'- -cGAUGCGUcuggaAGaGUAAugguucuuccAACAGUGUCACa -3'
miRNA:   3'- ccCUAUGCA-----UC-CGUU----------UUGUCAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 17341 0.71 0.999431
Target:  5'- cGGGA-ACGUGGGUcgccgccAGCGGUAUCGu -3'
miRNA:   3'- -CCCUaUGCAUCCGuu-----UUGUCAUAGUg -5'
13946 5' -45.5 NC_003521.1 + 29818 0.68 0.999987
Target:  5'- cGGGGUGUGUcGGUggGugGGUcgCGCc -3'
miRNA:   3'- -CCCUAUGCAuCCGuuUugUCAuaGUG- -5'
13946 5' -45.5 NC_003521.1 + 36979 0.66 1
Target:  5'- uGGGGUagGCGUGcGGCAcgaaGGGCAccAUCACc -3'
miRNA:   3'- -CCCUA--UGCAU-CCGU----UUUGUcaUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 49006 0.67 0.999999
Target:  5'- aGGGcguCGUAGGgG--GCAGUacaGUCACg -3'
miRNA:   3'- -CCCuauGCAUCCgUuuUGUCA---UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 60700 0.66 1
Target:  5'- gGGGAccCGgGGGCGGcGCGG-GUCGCa -3'
miRNA:   3'- -CCCUauGCaUCCGUUuUGUCaUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 66029 0.68 0.999993
Target:  5'- uGGGcgcugacagaaAUGC-UGGGCAAGACGGUAccCACc -3'
miRNA:   3'- -CCC-----------UAUGcAUCCGUUUUGUCAUa-GUG- -5'
13946 5' -45.5 NC_003521.1 + 66872 0.66 0.999999
Target:  5'- uGGGGUcGCGcGGGUcgGGCAGgggCGCg -3'
miRNA:   3'- -CCCUA-UGCaUCCGuuUUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 67748 0.67 0.999997
Target:  5'- aGGGUGCGgucgaAGGCGAAGCccu-UCACc -3'
miRNA:   3'- cCCUAUGCa----UCCGUUUUGucauAGUG- -5'
13946 5' -45.5 NC_003521.1 + 69453 0.7 0.999895
Target:  5'- -aGGUGCGcgAGGCGcaGGGCAGgAUCACg -3'
miRNA:   3'- ccCUAUGCa-UCCGU--UUUGUCaUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 72538 0.69 0.99992
Target:  5'- cGGAgGCGgcGGCG--ACGGUGUCGu -3'
miRNA:   3'- cCCUaUGCauCCGUuuUGUCAUAGUg -5'
13946 5' -45.5 NC_003521.1 + 72852 0.72 0.998434
Target:  5'- gGGGcgGCGacggUAGGCAcgGCGGUcgucGUCACc -3'
miRNA:   3'- -CCCuaUGC----AUCCGUuuUGUCA----UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 72943 0.66 1
Target:  5'- uGGGuggACG-GGGCGGAAUAGgggCGCc -3'
miRNA:   3'- -CCCua-UGCaUCCGUUUUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 75324 0.68 0.999993
Target:  5'- cGGAgGCgGUGGGCAGGAUcuGGUGcuccUCGCa -3'
miRNA:   3'- cCCUaUG-CAUCCGUUUUG--UCAU----AGUG- -5'
13946 5' -45.5 NC_003521.1 + 76989 0.67 0.999998
Target:  5'- uGGcgGCGaUGGGCAGGcACGGcAUCAUg -3'
miRNA:   3'- cCCuaUGC-AUCCGUUU-UGUCaUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 77731 0.72 0.999132
Target:  5'- cGGuagcaGCGgcGGCG--GCAGUGUCACg -3'
miRNA:   3'- cCCua---UGCauCCGUuuUGUCAUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.