miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 5' -45.5 NC_003521.1 + 14460 1.14 0.025986
Target:  5'- uGGGAUACGUAGGCAAAACAGUAUCACu -3'
miRNA:   3'- -CCCUAUGCAUCCGUUUUGUCAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 114996 0.76 0.984606
Target:  5'- uGGGGcACGUAGaGCAgcAGACAG-GUCACg -3'
miRNA:   3'- -CCCUaUGCAUC-CGU--UUUGUCaUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 192154 0.75 0.988014
Target:  5'- cGGAUccACGUAGGUcu-GCGGUGUCAg -3'
miRNA:   3'- cCCUA--UGCAUCCGuuuUGUCAUAGUg -5'
13946 5' -45.5 NC_003521.1 + 205278 0.75 0.990807
Target:  5'- cGGcgGCGUGGGCGAGaaccugGCGGUG-CGCg -3'
miRNA:   3'- cCCuaUGCAUCCGUUU------UGUCAUaGUG- -5'
13946 5' -45.5 NC_003521.1 + 93014 0.73 0.996244
Target:  5'- cGGGAUguGCGUauacGGGCAGgcaGACGGUccggagGUCGCg -3'
miRNA:   3'- -CCCUA--UGCA----UCCGUU---UUGUCA------UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 72852 0.72 0.998434
Target:  5'- gGGGcgGCGacggUAGGCAcgGCGGUcgucGUCACc -3'
miRNA:   3'- -CCCuaUGC----AUCCGUuuUGUCA----UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 124089 0.72 0.998706
Target:  5'- cGGGcccgacgGCGUGGGCGggAAGCAGcgcGUCGCu -3'
miRNA:   3'- -CCCua-----UGCAUCCGU--UUUGUCa--UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 77731 0.72 0.999132
Target:  5'- cGGuagcaGCGgcGGCG--GCAGUGUCACg -3'
miRNA:   3'- cCCua---UGCauCCGUuuUGUCAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 17341 0.71 0.999431
Target:  5'- cGGGA-ACGUGGGUcgccgccAGCGGUAUCGu -3'
miRNA:   3'- -CCCUaUGCAUCCGuu-----UUGUCAUAGUg -5'
13946 5' -45.5 NC_003521.1 + 141360 0.71 0.999431
Target:  5'- cGGGUGCGgcGGCGGu-CGGUGaCGCg -3'
miRNA:   3'- cCCUAUGCauCCGUUuuGUCAUaGUG- -5'
13946 5' -45.5 NC_003521.1 + 10664 0.7 0.999824
Target:  5'- -aGAUGCG-GGGCGAcGCGGUAUC-Ca -3'
miRNA:   3'- ccCUAUGCaUCCGUUuUGUCAUAGuG- -5'
13946 5' -45.5 NC_003521.1 + 203521 0.7 0.999863
Target:  5'- aGGAgACGUgcagacggAGGCGcAGCuGUGUCACa -3'
miRNA:   3'- cCCUaUGCA--------UCCGUuUUGuCAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 149635 0.7 0.999863
Target:  5'- gGGGGUgACG-AGGCGcAGACAGgugCGCa -3'
miRNA:   3'- -CCCUA-UGCaUCCGU-UUUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 190558 0.7 0.999863
Target:  5'- uGGGccGCG-GGGUucgcGGCAGUAUCGCa -3'
miRNA:   3'- -CCCuaUGCaUCCGuu--UUGUCAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 69453 0.7 0.999895
Target:  5'- -aGGUGCGcgAGGCGcaGGGCAGgAUCACg -3'
miRNA:   3'- ccCUAUGCa-UCCGU--UUUGUCaUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 154002 0.69 0.99992
Target:  5'- uGGAUugGUGGGCc--ACGGUGggCAUc -3'
miRNA:   3'- cCCUAugCAUCCGuuuUGUCAUa-GUG- -5'
13946 5' -45.5 NC_003521.1 + 72538 0.69 0.99992
Target:  5'- cGGAgGCGgcGGCG--ACGGUGUCGu -3'
miRNA:   3'- cCCUaUGCauCCGUuuUGUCAUAGUg -5'
13946 5' -45.5 NC_003521.1 + 193312 0.69 0.999939
Target:  5'- gGGGGUG-GUGGGCAcGGugGGggugGUCGCc -3'
miRNA:   3'- -CCCUAUgCAUCCGU-UUugUCa---UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 99429 0.69 0.999954
Target:  5'- aGGGAca-GUAGGCcagcauGAAGCGGUAgggCGCc -3'
miRNA:   3'- -CCCUaugCAUCCG------UUUUGUCAUa--GUG- -5'
13946 5' -45.5 NC_003521.1 + 197508 0.69 0.999966
Target:  5'- gGGGggACGgGGGCAAAACGGagGggGCg -3'
miRNA:   3'- -CCCuaUGCaUCCGUUUUGUCa-UagUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.