Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13946 | 5' | -45.5 | NC_003521.1 | + | 66872 | 0.66 | 0.999999 |
Target: 5'- uGGGGUcGCGcGGGUcgGGCAGgggCGCg -3' miRNA: 3'- -CCCUA-UGCaUCCGuuUUGUCauaGUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 92703 | 0.66 | 0.999999 |
Target: 5'- cGGGGUGCGgggAGGCuGGGgGGUGa--- -3' miRNA: 3'- -CCCUAUGCa--UCCGuUUUgUCAUagug -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 137619 | 0.66 | 1 |
Target: 5'- cGGAUGCGggaGGGCGGcuccAGCGGgccCGCg -3' miRNA: 3'- cCCUAUGCa--UCCGUU----UUGUCauaGUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 36979 | 0.66 | 1 |
Target: 5'- uGGGGUagGCGUGcGGCAcgaaGGGCAccAUCACc -3' miRNA: 3'- -CCCUA--UGCAU-CCGU----UUUGUcaUAGUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 112183 | 0.66 | 1 |
Target: 5'- aGGGcgGCGUcgguacacAGGuCGAAGCGGgcggCGCg -3' miRNA: 3'- -CCCuaUGCA--------UCC-GUUUUGUCaua-GUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 228978 | 0.66 | 1 |
Target: 5'- aGGaGGUGCGcGGGCGGcGCAGgaccggcagCACg -3' miRNA: 3'- -CC-CUAUGCaUCCGUUuUGUCaua------GUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 72943 | 0.66 | 1 |
Target: 5'- uGGGuggACG-GGGCGGAAUAGgggCGCc -3' miRNA: 3'- -CCCua-UGCaUCCGUUUUGUCauaGUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 139123 | 0.66 | 1 |
Target: 5'- gGGGGUugGUugcAGGCcAAGCAGg----- -3' miRNA: 3'- -CCCUAugCA---UCCGuUUUGUCauagug -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 60700 | 0.66 | 1 |
Target: 5'- gGGGAccCGgGGGCGGcGCGG-GUCGCa -3' miRNA: 3'- -CCCUauGCaUCCGUUuUGUCaUAGUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 187899 | 0.66 | 0.999999 |
Target: 5'- cGGGcgGCGgGGGCAGgucgaucAGCAGc-UCGCg -3' miRNA: 3'- -CCCuaUGCaUCCGUU-------UUGUCauAGUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 15725 | 0.66 | 1 |
Target: 5'- -cGAUGCGUcuggaAGaGUAAugguucuuccAACAGUGUCACa -3' miRNA: 3'- ccCUAUGCA-----UC-CGUU----------UUGUCAUAGUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 131406 | 0.66 | 1 |
Target: 5'- cGGAUGCGaucGGCcGAGgGGUcgCGCu -3' miRNA: 3'- cCCUAUGCau-CCGuUUUgUCAuaGUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 203552 | 0.66 | 0.999999 |
Target: 5'- uGGGG---GUGGGCA--GCGGggGUCGCg -3' miRNA: 3'- -CCCUaugCAUCCGUuuUGUCa-UAGUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 220025 | 0.67 | 0.999998 |
Target: 5'- aGGcgACGUAGGCG--ACAGagaCACa -3' miRNA: 3'- cCCuaUGCAUCCGUuuUGUCauaGUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 80797 | 0.67 | 0.999997 |
Target: 5'- uGGGcucCGccGGCAAGGCGGUGggCACg -3' miRNA: 3'- -CCCuauGCauCCGUUUUGUCAUa-GUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 67748 | 0.67 | 0.999997 |
Target: 5'- aGGGUGCGgucgaAGGCGAAGCccu-UCACc -3' miRNA: 3'- cCCUAUGCa----UCCGUUUUGucauAGUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 80763 | 0.67 | 0.999997 |
Target: 5'- cGGAgcCGUGGGCGGcGCGGUGg--- -3' miRNA: 3'- cCCUauGCAUCCGUUuUGUCAUagug -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 234229 | 0.67 | 0.999997 |
Target: 5'- uGGGAgGCGUGGGUA--GCGG-AUC-Cg -3' miRNA: 3'- -CCCUaUGCAUCCGUuuUGUCaUAGuG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 78821 | 0.67 | 0.999995 |
Target: 5'- gGGGGUGCGacaccGGCGccGAcACAGUcucAUCACg -3' miRNA: 3'- -CCCUAUGCau---CCGU--UU-UGUCA---UAGUG- -5' |
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13946 | 5' | -45.5 | NC_003521.1 | + | 49006 | 0.67 | 0.999999 |
Target: 5'- aGGGcguCGUAGGgG--GCAGUacaGUCACg -3' miRNA: 3'- -CCCuauGCAUCCgUuuUGUCA---UAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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