miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 5' -45.5 NC_003521.1 + 118681 0.67 0.999997
Target:  5'- cGGGAgGCGgcGGUAccgcugguggaGGGCAGgcUCAUg -3'
miRNA:   3'- -CCCUaUGCauCCGU-----------UUUGUCauAGUG- -5'
13946 5' -45.5 NC_003521.1 + 198081 0.68 0.999993
Target:  5'- cGGAUGCGUugugggGGGCGucuGACGGUGcUGCc -3'
miRNA:   3'- cCCUAUGCA------UCCGUu--UUGUCAUaGUG- -5'
13946 5' -45.5 NC_003521.1 + 81924 0.68 0.999993
Target:  5'- aGGGGUACuUGGaGCG-GGCGGUgGUCACc -3'
miRNA:   3'- -CCCUAUGcAUC-CGUuUUGUCA-UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 103096 0.68 0.999993
Target:  5'- gGGGAUGCGaaggGGGC-GGAUAGga-CGCg -3'
miRNA:   3'- -CCCUAUGCa---UCCGuUUUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 77742 0.67 0.999995
Target:  5'- uGGGcgGCGUcugguagugguuGGGCAGGAUGuaGUCGCg -3'
miRNA:   3'- -CCCuaUGCA------------UCCGUUUUGUcaUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 166847 0.67 0.999995
Target:  5'- aGGAUACGcAGGCGGuggcgcGGCGGg--CGCa -3'
miRNA:   3'- cCCUAUGCaUCCGUU------UUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 170534 0.67 0.999996
Target:  5'- cGGGG-ACGggGGGCAGGAgGGUuuauguacacagcgcGUCACc -3'
miRNA:   3'- -CCCUaUGCa-UCCGUUUUgUCA---------------UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 5717 0.67 0.999997
Target:  5'- cGGGGUuauguguACGgcccGGGCAcgGCGcGUGUCAUg -3'
miRNA:   3'- -CCCUA-------UGCa---UCCGUuuUGU-CAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 155826 0.67 0.999997
Target:  5'- cGGGccUGCGUcaucgguuaccaGGGC---ACGGUGUCGCg -3'
miRNA:   3'- -CCCu-AUGCA------------UCCGuuuUGUCAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 66029 0.68 0.999993
Target:  5'- uGGGcgcugacagaaAUGC-UGGGCAAGACGGUAccCACc -3'
miRNA:   3'- -CCC-----------UAUGcAUCCGUUUUGUCAUa-GUG- -5'
13946 5' -45.5 NC_003521.1 + 225633 0.68 0.999987
Target:  5'- cGGGAUccaccACGUAGGUcugcGAAuuGGUGUCGu -3'
miRNA:   3'- -CCCUA-----UGCAUCCG----UUUugUCAUAGUg -5'
13946 5' -45.5 NC_003521.1 + 111223 0.68 0.999982
Target:  5'- cGGAaa-GUGGGCGAcACGG-GUCACa -3'
miRNA:   3'- cCCUaugCAUCCGUUuUGUCaUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 72852 0.72 0.998434
Target:  5'- gGGGcgGCGacggUAGGCAcgGCGGUcgucGUCACc -3'
miRNA:   3'- -CCCuaUGC----AUCCGUuuUGUCA----UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 124089 0.72 0.998706
Target:  5'- cGGGcccgacgGCGUGGGCGggAAGCAGcgcGUCGCu -3'
miRNA:   3'- -CCCua-----UGCAUCCGU--UUUGUCa--UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 141360 0.71 0.999431
Target:  5'- cGGGUGCGgcGGCGGu-CGGUGaCGCg -3'
miRNA:   3'- cCCUAUGCauCCGUUuuGUCAUaGUG- -5'
13946 5' -45.5 NC_003521.1 + 203521 0.7 0.999863
Target:  5'- aGGAgACGUgcagacggAGGCGcAGCuGUGUCACa -3'
miRNA:   3'- cCCUaUGCA--------UCCGUuUUGuCAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 69453 0.7 0.999895
Target:  5'- -aGGUGCGcgAGGCGcaGGGCAGgAUCACg -3'
miRNA:   3'- ccCUAUGCa-UCCGU--UUUGUCaUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 72538 0.69 0.99992
Target:  5'- cGGAgGCGgcGGCG--ACGGUGUCGu -3'
miRNA:   3'- cCCUaUGCauCCGUuuUGUCAUAGUg -5'
13946 5' -45.5 NC_003521.1 + 193312 0.69 0.999939
Target:  5'- gGGGGUG-GUGGGCAcGGugGGggugGUCGCc -3'
miRNA:   3'- -CCCUAUgCAUCCGU-UUugUCa---UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 99429 0.69 0.999954
Target:  5'- aGGGAca-GUAGGCcagcauGAAGCGGUAgggCGCc -3'
miRNA:   3'- -CCCUaugCAUCCG------UUUUGUCAUa--GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.