miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13946 5' -45.5 NC_003521.1 + 234229 0.67 0.999997
Target:  5'- uGGGAgGCGUGGGUA--GCGG-AUC-Cg -3'
miRNA:   3'- -CCCUaUGCAUCCGUuuUGUCaUAGuG- -5'
13946 5' -45.5 NC_003521.1 + 228978 0.66 1
Target:  5'- aGGaGGUGCGcGGGCGGcGCAGgaccggcagCACg -3'
miRNA:   3'- -CC-CUAUGCaUCCGUUuUGUCaua------GUG- -5'
13946 5' -45.5 NC_003521.1 + 225633 0.68 0.999987
Target:  5'- cGGGAUccaccACGUAGGUcugcGAAuuGGUGUCGu -3'
miRNA:   3'- -CCCUA-----UGCAUCCG----UUUugUCAUAGUg -5'
13946 5' -45.5 NC_003521.1 + 221636 0.67 0.999999
Target:  5'- gGGGAgGCGc-GGCGGGACcaUGUCGCu -3'
miRNA:   3'- -CCCUaUGCauCCGUUUUGucAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 220025 0.67 0.999998
Target:  5'- aGGcgACGUAGGCG--ACAGagaCACa -3'
miRNA:   3'- cCCuaUGCAUCCGUuuUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 205278 0.75 0.990807
Target:  5'- cGGcgGCGUGGGCGAGaaccugGCGGUG-CGCg -3'
miRNA:   3'- cCCuaUGCAUCCGUUU------UGUCAUaGUG- -5'
13946 5' -45.5 NC_003521.1 + 203552 0.66 0.999999
Target:  5'- uGGGG---GUGGGCA--GCGGggGUCGCg -3'
miRNA:   3'- -CCCUaugCAUCCGUuuUGUCa-UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 203521 0.7 0.999863
Target:  5'- aGGAgACGUgcagacggAGGCGcAGCuGUGUCACa -3'
miRNA:   3'- cCCUaUGCA--------UCCGUuUUGuCAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 198081 0.68 0.999993
Target:  5'- cGGAUGCGUugugggGGGCGucuGACGGUGcUGCc -3'
miRNA:   3'- cCCUAUGCA------UCCGUu--UUGUCAUaGUG- -5'
13946 5' -45.5 NC_003521.1 + 197508 0.69 0.999966
Target:  5'- gGGGggACGgGGGCAAAACGGagGggGCg -3'
miRNA:   3'- -CCCuaUGCaUCCGUUUUGUCa-UagUG- -5'
13946 5' -45.5 NC_003521.1 + 193312 0.69 0.999939
Target:  5'- gGGGGUG-GUGGGCAcGGugGGggugGUCGCc -3'
miRNA:   3'- -CCCUAUgCAUCCGU-UUugUCa---UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 192154 0.75 0.988014
Target:  5'- cGGAUccACGUAGGUcu-GCGGUGUCAg -3'
miRNA:   3'- cCCUA--UGCAUCCGuuuUGUCAUAGUg -5'
13946 5' -45.5 NC_003521.1 + 190558 0.7 0.999863
Target:  5'- uGGGccGCG-GGGUucgcGGCAGUAUCGCa -3'
miRNA:   3'- -CCCuaUGCaUCCGuu--UUGUCAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 187899 0.66 0.999999
Target:  5'- cGGGcgGCGgGGGCAGgucgaucAGCAGc-UCGCg -3'
miRNA:   3'- -CCCuaUGCaUCCGUU-------UUGUCauAGUG- -5'
13946 5' -45.5 NC_003521.1 + 170534 0.67 0.999996
Target:  5'- cGGGG-ACGggGGGCAGGAgGGUuuauguacacagcgcGUCACc -3'
miRNA:   3'- -CCCUaUGCa-UCCGUUUUgUCA---------------UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 166847 0.67 0.999995
Target:  5'- aGGAUACGcAGGCGGuggcgcGGCGGg--CGCa -3'
miRNA:   3'- cCCUAUGCaUCCGUU------UUGUCauaGUG- -5'
13946 5' -45.5 NC_003521.1 + 156832 0.67 0.999997
Target:  5'- uGGAUGCGauggcggucgcUGGGCAggcuGAGCAcGUuGUCACa -3'
miRNA:   3'- cCCUAUGC-----------AUCCGU----UUUGU-CA-UAGUG- -5'
13946 5' -45.5 NC_003521.1 + 155826 0.67 0.999997
Target:  5'- cGGGccUGCGUcaucgguuaccaGGGC---ACGGUGUCGCg -3'
miRNA:   3'- -CCCu-AUGCA------------UCCGuuuUGUCAUAGUG- -5'
13946 5' -45.5 NC_003521.1 + 154002 0.69 0.99992
Target:  5'- uGGAUugGUGGGCc--ACGGUGggCAUc -3'
miRNA:   3'- cCCUAugCAUCCGuuuUGUCAUa-GUG- -5'
13946 5' -45.5 NC_003521.1 + 151366 0.69 0.999966
Target:  5'- cGGGuggaagACGUGGGCAcggGGGCGGUGaCGg -3'
miRNA:   3'- -CCCua----UGCAUCCGU---UUUGUCAUaGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.