miRNA display CGI


Results 61 - 80 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 117620 0.71 0.472737
Target:  5'- cCCGUCCUaCCCGG-CGCCguaUGC-GGCc -3'
miRNA:   3'- -GGCAGGAgGGGCCaGCGGa--GCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 118910 0.7 0.580512
Target:  5'- cUCGcCCUCgUCGG-CGCCgcggCGUGGGCg -3'
miRNA:   3'- -GGCaGGAGgGGCCaGCGGa---GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 119884 0.73 0.391167
Target:  5'- uCgGUUCUCCUC-GUCGCCcCGCGGGUg -3'
miRNA:   3'- -GgCAGGAGGGGcCAGCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 120075 0.66 0.764345
Target:  5'- gCGUgCgcaCCaCCGuGUCGCCcCGCuGGCg -3'
miRNA:   3'- gGCAgGa--GG-GGC-CAGCGGaGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 121204 0.69 0.627171
Target:  5'- cCUGccCCUCgCCGGagcCGCCgcCGCGGGCa -3'
miRNA:   3'- -GGCa-GGAGgGGCCa--GCGGa-GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 122493 0.66 0.789883
Target:  5'- gCGcUCagUCgCCGGcaccCGCgCUCGCAGGCa -3'
miRNA:   3'- gGC-AGg-AGgGGCCa---GCG-GAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 123113 0.69 0.636535
Target:  5'- aCCGUCCUCgCCGGgcCGCUguacgaaGUAcGGCa -3'
miRNA:   3'- -GGCAGGAGgGGCCa-GCGGag-----CGU-CCG- -5'
13947 3' -62.4 NC_003521.1 + 123177 0.66 0.755626
Target:  5'- aCCGUCU--CgCGG-CGCagUCGCAGGCg -3'
miRNA:   3'- -GGCAGGagGgGCCaGCGg-AGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 124144 0.67 0.719911
Target:  5'- gCCGcugCCUCCgCCGc-CGCUgccgUGCAGGCg -3'
miRNA:   3'- -GGCa--GGAGG-GGCcaGCGGa---GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 126067 0.66 0.78148
Target:  5'- aCGgCCacgcacaacCCCUGG--GCCUCGCAGGCc -3'
miRNA:   3'- gGCaGGa--------GGGGCCagCGGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 126975 0.67 0.746817
Target:  5'- gCCGUCgUCgCCGGcCGCCcCGCugccGCu -3'
miRNA:   3'- -GGCAGgAGgGGCCaGCGGaGCGuc--CG- -5'
13947 3' -62.4 NC_003521.1 + 127288 0.66 0.798166
Target:  5'- aCGUCCgacacgCCgUGGUggcgCGCCUCGauguuGGCg -3'
miRNA:   3'- gGCAGGa-----GGgGCCA----GCGGAGCgu---CCG- -5'
13947 3' -62.4 NC_003521.1 + 128416 0.66 0.78148
Target:  5'- aCGcCCUgCCUgcaGGccuUCGCCgagCGCGGGCc -3'
miRNA:   3'- gGCaGGAgGGG---CC---AGCGGa--GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 130063 0.7 0.525586
Target:  5'- aCGUCUUCCgCGGcCuGCuCUCGCuGGCc -3'
miRNA:   3'- gGCAGGAGGgGCCaG-CG-GAGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 130139 0.7 0.534619
Target:  5'- uCC-UCCUCCCCGGcCGUCacccacucgUCGCAGuaGCa -3'
miRNA:   3'- -GGcAGGAGGGGCCaGCGG---------AGCGUC--CG- -5'
13947 3' -62.4 NC_003521.1 + 131351 0.7 0.571252
Target:  5'- gCCGUCCggagCCCgcgcgagccgCGGUCGCCgccaccgCGUccgAGGCc -3'
miRNA:   3'- -GGCAGGa---GGG----------GCCAGCGGa------GCG---UCCG- -5'
13947 3' -62.4 NC_003521.1 + 132655 0.66 0.806324
Target:  5'- gCGUCUg--CCGGaUGaCCUCGCGGGUg -3'
miRNA:   3'- gGCAGGaggGGCCaGC-GGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 134025 0.67 0.719911
Target:  5'- gCCG-CgUCCCCGGaaUCGCCgggccUGCcGGCc -3'
miRNA:   3'- -GGCaGgAGGGGCC--AGCGGa----GCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 135017 0.66 0.772965
Target:  5'- gUCGcCCUUCUCGGUgaaGCUgUGCAGGUg -3'
miRNA:   3'- -GGCaGGAGGGGCCAg--CGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 135364 0.73 0.391167
Target:  5'- gCCGU-CUCCgCGGcgguuaUCGCC-CGCGGGCg -3'
miRNA:   3'- -GGCAgGAGGgGCC------AGCGGaGCGUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.