miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 92040 0.66 0.789883
Target:  5'- -gGUCCgggggUCCCCGGggUGCCUCccguaGCGauGGCg -3'
miRNA:   3'- ggCAGG-----AGGGGCCa-GCGGAG-----CGU--CCG- -5'
13947 3' -62.4 NC_003521.1 + 92153 0.67 0.719911
Target:  5'- cCCGgcUCCuUCCaCCGGcUCGCC-CGgGGGUc -3'
miRNA:   3'- -GGC--AGG-AGG-GGCC-AGCGGaGCgUCCG- -5'
13947 3' -62.4 NC_003521.1 + 92249 0.67 0.737923
Target:  5'- cCCGUcgacCCUCCCUGGgUGCCgcugcCGCuaccGGCc -3'
miRNA:   3'- -GGCA----GGAGGGGCCaGCGGa----GCGu---CCG- -5'
13947 3' -62.4 NC_003521.1 + 92349 0.71 0.47877
Target:  5'- aCCGcCCUgcgcaccccccgacCCCCGGUcCGCCaUCGCuacgggAGGCa -3'
miRNA:   3'- -GGCaGGA--------------GGGGCCA-GCGG-AGCG------UCCG- -5'
13947 3' -62.4 NC_003521.1 + 92371 0.68 0.683187
Target:  5'- cCCGUCCgcUCgCCCGcugccGUCGCUcCGCcGGCu -3'
miRNA:   3'- -GGCAGG--AG-GGGC-----CAGCGGaGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 92660 0.7 0.552845
Target:  5'- cCCaUCC-CCCCGGUCgagcaGCCUCgGCgAGGUg -3'
miRNA:   3'- -GGcAGGaGGGGCCAG-----CGGAG-CG-UCCG- -5'
13947 3' -62.4 NC_003521.1 + 93676 0.7 0.580512
Target:  5'- cCUGUCCcggaCCCCGGUCGgCCUUuu-GGCu -3'
miRNA:   3'- -GGCAGGa---GGGGCCAGC-GGAGcguCCG- -5'
13947 3' -62.4 NC_003521.1 + 97474 0.67 0.737923
Target:  5'- gCCGcUUCUCaCCCGcGagcCGCCaUCGguGGCg -3'
miRNA:   3'- -GGC-AGGAG-GGGC-Ca--GCGG-AGCguCCG- -5'
13947 3' -62.4 NC_003521.1 + 97784 0.7 0.534619
Target:  5'- gUCGUCuCUCUCCguGGUCGCC-CGC-GGUa -3'
miRNA:   3'- -GGCAG-GAGGGG--CCAGCGGaGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 99256 0.67 0.719911
Target:  5'- aCCGcgguaCCUCCCCuGaCGCCUCcuaaAGGCg -3'
miRNA:   3'- -GGCa----GGAGGGGcCaGCGGAGcg--UCCG- -5'
13947 3' -62.4 NC_003521.1 + 100765 0.66 0.806324
Target:  5'- aCCGUCCgacgCCCgCGGUgcCaCCUgGC-GGCg -3'
miRNA:   3'- -GGCAGGa---GGG-GCCA--GcGGAgCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 105404 0.66 0.772965
Target:  5'- cUCGUCCUgggggaCCUCGGgggucUGCCUCaGgAGGCu -3'
miRNA:   3'- -GGCAGGA------GGGGCCa----GCGGAG-CgUCCG- -5'
13947 3' -62.4 NC_003521.1 + 105574 0.67 0.728952
Target:  5'- gCGUCCgCCgCCGugucGUCGCCgcCGCcGGCg -3'
miRNA:   3'- gGCAGGaGG-GGC----CAGCGGa-GCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 106388 0.67 0.701647
Target:  5'- gCCG-CCUCCUCcGUCGUCg-GguGGCg -3'
miRNA:   3'- -GGCaGGAGGGGcCAGCGGagCguCCG- -5'
13947 3' -62.4 NC_003521.1 + 106852 0.66 0.755626
Target:  5'- aCgGUCCUCaccgaCCGGaUCGaCUCGCAGa- -3'
miRNA:   3'- -GgCAGGAGg----GGCC-AGCgGAGCGUCcg -5'
13947 3' -62.4 NC_003521.1 + 113606 0.67 0.710807
Target:  5'- cCCGUCCcccuggaagccCCCCGG-CGUCUUggcccaGCAGGUc -3'
miRNA:   3'- -GGCAGGa----------GGGGCCaGCGGAG------CGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 113820 0.67 0.719911
Target:  5'- gCGUCCUCCUCgcgcugguGGUCGUCccggCGCgAGGg -3'
miRNA:   3'- gGCAGGAGGGG--------CCAGCGGa---GCG-UCCg -5'
13947 3' -62.4 NC_003521.1 + 115061 0.68 0.645896
Target:  5'- -aGUCCaugaUCCCgaaGGUCGUgUCGcCGGGCu -3'
miRNA:   3'- ggCAGG----AGGGg--CCAGCGgAGC-GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 116301 0.69 0.627171
Target:  5'- uUCGUCCccuucuUCCUCcGUCGUCUaCGUGGGCg -3'
miRNA:   3'- -GGCAGG------AGGGGcCAGCGGA-GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 117320 0.67 0.737923
Target:  5'- gCCGg-CUCCgCGGcCGCCUCG--GGCg -3'
miRNA:   3'- -GGCagGAGGgGCCaGCGGAGCguCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.