miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 39597 0.67 0.728952
Target:  5'- gCgGUCCUgCCCUGGguggcggCGUCUCGCAauGCu -3'
miRNA:   3'- -GgCAGGA-GGGGCCa------GCGGAGCGUc-CG- -5'
13947 3' -62.4 NC_003521.1 + 42333 0.77 0.241423
Target:  5'- gCCGUgCUCgCUGGUCGCgccgCUCGUGGGCg -3'
miRNA:   3'- -GGCAgGAGgGGCCAGCG----GAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 43852 0.7 0.543707
Target:  5'- cCCGUCacaggcgCCCCGGcCGgCUCcCGGGCc -3'
miRNA:   3'- -GGCAGga-----GGGGCCaGCgGAGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 45431 0.67 0.746817
Target:  5'- cUCGgCCUCCgauuaCGGUacgggCGCCUCGUccucGGGCg -3'
miRNA:   3'- -GGCaGGAGGg----GCCA-----GCGGAGCG----UCCG- -5'
13947 3' -62.4 NC_003521.1 + 46240 0.67 0.746817
Target:  5'- uCUGUCgCacggCCUCGacGUCGcCCUCGguGGCg -3'
miRNA:   3'- -GGCAG-Ga---GGGGC--CAGC-GGAGCguCCG- -5'
13947 3' -62.4 NC_003521.1 + 47815 0.67 0.728952
Target:  5'- gCCGUCUUCCCCGcUCGacauggacgaCCUC-CGGGa -3'
miRNA:   3'- -GGCAGGAGGGGCcAGC----------GGAGcGUCCg -5'
13947 3' -62.4 NC_003521.1 + 50138 0.67 0.719911
Target:  5'- cCCGUCuccuCUCCCCGG-CGUaguaaUCG-GGGCa -3'
miRNA:   3'- -GGCAG----GAGGGGCCaGCGg----AGCgUCCG- -5'
13947 3' -62.4 NC_003521.1 + 54076 0.67 0.746817
Target:  5'- gCCG-CCgagCCCCagcaugGGcUCGCCUaGCAGGUc -3'
miRNA:   3'- -GGCaGGa--GGGG------CC-AGCGGAgCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 56596 0.68 0.683187
Target:  5'- gCGcCCUgCgCGGccgCGCCUCGguGGUc -3'
miRNA:   3'- gGCaGGAgGgGCCa--GCGGAGCguCCG- -5'
13947 3' -62.4 NC_003521.1 + 59615 0.68 0.683187
Target:  5'- gCGgcggCCCCGGcggcgaccgCGgCUCGCAGGCg -3'
miRNA:   3'- gGCaggaGGGGCCa--------GCgGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 59850 0.67 0.74149
Target:  5'- aCCGUCCUUCuuGGcgCGCUUcucggacgaaaccccCGCGGcGCc -3'
miRNA:   3'- -GGCAGGAGGggCCa-GCGGA---------------GCGUC-CG- -5'
13947 3' -62.4 NC_003521.1 + 65749 0.68 0.692438
Target:  5'- gUCG-CCUgCCUGGUCaCCUCGUccaGGGUg -3'
miRNA:   3'- -GGCaGGAgGGGCCAGcGGAGCG---UCCG- -5'
13947 3' -62.4 NC_003521.1 + 72568 0.66 0.78148
Target:  5'- gCGaCCUCUCaGcGUCGCCaUCGCAaccGGCg -3'
miRNA:   3'- gGCaGGAGGGgC-CAGCGG-AGCGU---CCG- -5'
13947 3' -62.4 NC_003521.1 + 72692 0.66 0.806324
Target:  5'- cCCGUCCaCCCaCGG-CGCUgUCGUccucGGCg -3'
miRNA:   3'- -GGCAGGaGGG-GCCaGCGG-AGCGu---CCG- -5'
13947 3' -62.4 NC_003521.1 + 74315 0.7 0.549184
Target:  5'- gCCGUgCUCUUCGGUCGCCUgcacccucagcaccUGCAcgagaugaaacugGGCa -3'
miRNA:   3'- -GGCAgGAGGGGCCAGCGGA--------------GCGU-------------CCG- -5'
13947 3' -62.4 NC_003521.1 + 75586 0.71 0.472737
Target:  5'- cUCGUCCUCCUCuucCGCUUCGCguucGGGCg -3'
miRNA:   3'- -GGCAGGAGGGGccaGCGGAGCG----UCCG- -5'
13947 3' -62.4 NC_003521.1 + 77893 0.66 0.78148
Target:  5'- gUCGaUCCUCUcggCCGG-CGCCgUCaCGGGCg -3'
miRNA:   3'- -GGC-AGGAGG---GGCCaGCGG-AGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 88917 0.66 0.798166
Target:  5'- aCCGaCCUggcggCCCUcugCGCCUCGCuGGGCu -3'
miRNA:   3'- -GGCaGGA-----GGGGccaGCGGAGCG-UCCG- -5'
13947 3' -62.4 NC_003521.1 + 89430 0.7 0.552845
Target:  5'- gCCGcucgUCUCCCCGGggcuugcgguuuUUGUC-CGCGGGCg -3'
miRNA:   3'- -GGCa---GGAGGGGCC------------AGCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 91608 0.67 0.719911
Target:  5'- aCCGUCCUCCCgaccaGcaccUCGCCUgCGCGuGCc -3'
miRNA:   3'- -GGCAGGAGGGg----Cc---AGCGGA-GCGUcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.