miRNA display CGI


Results 21 - 40 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 204351 0.67 0.710807
Target:  5'- gCGUCgUCCuCCGGUC-CUUCGUcgcGGCc -3'
miRNA:   3'- gGCAGgAGG-GGCCAGcGGAGCGu--CCG- -5'
13947 3' -62.4 NC_003521.1 + 203392 0.68 0.664586
Target:  5'- gUCG-CCUCagguCCCGGccaCGCCUCcCAGGCc -3'
miRNA:   3'- -GGCaGGAG----GGGCCa--GCGGAGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 200411 0.67 0.737923
Target:  5'- uUCGgCCUCCCUGcaCGCC-CGC-GGCa -3'
miRNA:   3'- -GGCaGGAGGGGCcaGCGGaGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 199856 0.68 0.645896
Target:  5'- gCGUCC-CCCCGGggccCGuccuuucuccuCCUUGCAGuGCg -3'
miRNA:   3'- gGCAGGaGGGGCCa---GC-----------GGAGCGUC-CG- -5'
13947 3' -62.4 NC_003521.1 + 197258 0.69 0.635599
Target:  5'- cCCGUCC-CCCCagucagcGGcCGCCucugUCGC-GGCg -3'
miRNA:   3'- -GGCAGGaGGGG-------CCaGCGG----AGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 196757 0.75 0.287317
Target:  5'- aCCGUCUgcugCCCCGGcCGgCgcgacCGCGGGCg -3'
miRNA:   3'- -GGCAGGa---GGGGCCaGCgGa----GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 189407 0.69 0.607523
Target:  5'- aCGUugaCCUaCCCCGGUacuccacuuacucCGCCU-GCAGGUa -3'
miRNA:   3'- gGCA---GGA-GGGGCCA-------------GCGGAgCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 187999 0.73 0.406743
Target:  5'- gCUGUCgauCUCCaCCGccGUCuCCUCGCAGGCg -3'
miRNA:   3'- -GGCAG---GAGG-GGC--CAGcGGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 187553 0.69 0.627171
Target:  5'- cCCGUCCUCCUucaGGucuuuuUCGCCaagucCGCGGGg -3'
miRNA:   3'- -GGCAGGAGGGg--CC------AGCGGa----GCGUCCg -5'
13947 3' -62.4 NC_003521.1 + 187081 0.68 0.6739
Target:  5'- aCCGUCagaUCUGGUCGCCcaCGCcguGGCg -3'
miRNA:   3'- -GGCAGgagGGGCCAGCGGa-GCGu--CCG- -5'
13947 3' -62.4 NC_003521.1 + 186804 0.67 0.746817
Target:  5'- gCCGgcccugCCUCCCaCGGa-GCCccCGCuGGCg -3'
miRNA:   3'- -GGCa-----GGAGGG-GCCagCGGa-GCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 180813 0.66 0.806324
Target:  5'- gCG-CCaCCCCGGUaCGCCgcggagaCGguGGUg -3'
miRNA:   3'- gGCaGGaGGGGCCA-GCGGa------GCguCCG- -5'
13947 3' -62.4 NC_003521.1 + 179350 0.68 0.662719
Target:  5'- uUCGUCCUCCCCuuucccgaaaccGUaCGCgUCGCucGGCu -3'
miRNA:   3'- -GGCAGGAGGGGc-----------CA-GCGgAGCGu-CCG- -5'
13947 3' -62.4 NC_003521.1 + 177455 0.66 0.755626
Target:  5'- uCCGUCCgcgauaUCCCCGacuaUCGUauguaUCGCGcGGCg -3'
miRNA:   3'- -GGCAGG------AGGGGCc---AGCGg----AGCGU-CCG- -5'
13947 3' -62.4 NC_003521.1 + 176193 0.7 0.543707
Target:  5'- uCUGUCCUCCuCCGG-CuCCUCGggcCAGGUc -3'
miRNA:   3'- -GGCAGGAGG-GGCCaGcGGAGC---GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 172041 0.73 0.383526
Target:  5'- gUGUCUaagUCCUCGGUgGUCUCGgCGGGCu -3'
miRNA:   3'- gGCAGG---AGGGGCCAgCGGAGC-GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 171091 0.67 0.737923
Target:  5'- gCCG-CCUCCCCGccCGCCguuacCGCguaccucaGGGCc -3'
miRNA:   3'- -GGCaGGAGGGGCcaGCGGa----GCG--------UCCG- -5'
13947 3' -62.4 NC_003521.1 + 168961 0.68 0.664586
Target:  5'- gCCGUCgCUCCCgCugcuGUCGCCgacgcgcgucggUCGCGGGa -3'
miRNA:   3'- -GGCAG-GAGGG-Gc---CAGCGG------------AGCGUCCg -5'
13947 3' -62.4 NC_003521.1 + 168763 0.66 0.798166
Target:  5'- gCCGUCCUCCgCCuc-CGUCUCGCc-GCc -3'
miRNA:   3'- -GGCAGGAGG-GGccaGCGGAGCGucCG- -5'
13947 3' -62.4 NC_003521.1 + 167109 0.7 0.551014
Target:  5'- gCCGgggacugaggagCCUCCCUGGggacuUCGCuuagaguaCUCGCAGGUg -3'
miRNA:   3'- -GGCa-----------GGAGGGGCC-----AGCG--------GAGCGUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.