miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 240905 0.67 0.737923
Target:  5'- uUCGgCCUCCCUGcaCGCC-CGC-GGCa -3'
miRNA:   3'- -GGCaGGAGGGGCcaGCGGaGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 236543 0.66 0.798166
Target:  5'- -gGUCCUUCCC--UCGCUUCuCAGGUu -3'
miRNA:   3'- ggCAGGAGGGGccAGCGGAGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 235845 0.66 0.755626
Target:  5'- cUCGUCCU-CCCGcaCGUCcCGCGGGUu -3'
miRNA:   3'- -GGCAGGAgGGGCcaGCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 232188 0.71 0.49885
Target:  5'- aCCGUCCUCCCaCGccauggGCCccCGCGGGUg -3'
miRNA:   3'- -GGCAGGAGGG-GCcag---CGGa-GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 226835 0.71 0.49885
Target:  5'- -gGUCCUCgCCCGccgccgCGCCggGCAGGCc -3'
miRNA:   3'- ggCAGGAG-GGGCca----GCGGagCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 224718 0.74 0.368545
Target:  5'- aCGUCCcgCCCgUGGugcUCGCCgaCGCAGGCg -3'
miRNA:   3'- gGCAGGa-GGG-GCC---AGCGGa-GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 224076 0.66 0.755626
Target:  5'- cUCGUCCUCCggCGGgcgCGCg-CGCcGGCg -3'
miRNA:   3'- -GGCAGGAGGg-GCCa--GCGgaGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 223755 0.68 0.6739
Target:  5'- --aUCCUCCCacucGUCGuCCUCGCugucGGCg -3'
miRNA:   3'- ggcAGGAGGGgc--CAGC-GGAGCGu---CCG- -5'
13947 3' -62.4 NC_003521.1 + 223016 0.66 0.78148
Target:  5'- gUCGUCgUCCgCCGGUCGCaCggccaGCAcGCc -3'
miRNA:   3'- -GGCAGgAGG-GGCCAGCG-Gag---CGUcCG- -5'
13947 3' -62.4 NC_003521.1 + 221790 0.67 0.74149
Target:  5'- aUCGUCUUCCUCGGcgggcaugggcuccgUCGgCgggGCGGGCg -3'
miRNA:   3'- -GGCAGGAGGGGCC---------------AGCgGag-CGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 220317 0.67 0.719911
Target:  5'- gCUGUCCUUCCUGG-CGUUggCGCugucGGGCc -3'
miRNA:   3'- -GGCAGGAGGGGCCaGCGGa-GCG----UCCG- -5'
13947 3' -62.4 NC_003521.1 + 218701 0.71 0.481367
Target:  5'- aUGUCCUCCgUGGUgcCGCCgcugUCGCuGGCc -3'
miRNA:   3'- gGCAGGAGGgGCCA--GCGG----AGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 214794 0.7 0.534619
Target:  5'- gCCGUCCUCUucaccgccgUCGGgCGCCgggCGC-GGCg -3'
miRNA:   3'- -GGCAGGAGG---------GGCCaGCGGa--GCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 214363 0.67 0.737923
Target:  5'- gCgGUgCUCCCaGGccaCGCCgUUGCAGGCc -3'
miRNA:   3'- -GgCAgGAGGGgCCa--GCGG-AGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 213164 0.66 0.805514
Target:  5'- gCCGUCCUcgaguccaccgacCCCCcGUCGCC-CGCGu-- -3'
miRNA:   3'- -GGCAGGA-------------GGGGcCAGCGGaGCGUccg -5'
13947 3' -62.4 NC_003521.1 + 211382 0.66 0.798166
Target:  5'- gCGUCCUCggcgCCUGGcugcugaGCCUCGgcgcgacggaCAGGCa -3'
miRNA:   3'- gGCAGGAG----GGGCCag-----CGGAGC----------GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 210888 0.71 0.472737
Target:  5'- aCGUCg-CCUCGGUgGCCgUCGcCAGGCc -3'
miRNA:   3'- gGCAGgaGGGGCCAgCGG-AGC-GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 210416 0.69 0.627171
Target:  5'- uUCGUCUgUCCCC-GUCaggGCCUaCGCAGGUu -3'
miRNA:   3'- -GGCAGG-AGGGGcCAG---CGGA-GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 209384 0.78 0.197269
Target:  5'- gUCGUCCUCCCCGuaGUCGUCUUcgGCGGcGCa -3'
miRNA:   3'- -GGCAGGAGGGGC--CAGCGGAG--CGUC-CG- -5'
13947 3' -62.4 NC_003521.1 + 206695 0.72 0.439033
Target:  5'- cCCGUacaCCUCCCC-GUCGCgauacgUGCGGGCg -3'
miRNA:   3'- -GGCA---GGAGGGGcCAGCGga----GCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.