miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 92660 0.7 0.552845
Target:  5'- cCCaUCC-CCCCGGUCgagcaGCCUCgGCgAGGUg -3'
miRNA:   3'- -GGcAGGaGGGGCCAG-----CGGAG-CG-UCCG- -5'
13947 3' -62.4 NC_003521.1 + 226835 0.71 0.49885
Target:  5'- -gGUCCUCgCCCGccgccgCGCCggGCAGGCc -3'
miRNA:   3'- ggCAGGAG-GGGCca----GCGGagCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 232188 0.71 0.49885
Target:  5'- aCCGUCCUCCCaCGccauggGCCccCGCGGGUg -3'
miRNA:   3'- -GGCAGGAGGG-GCcag---CGGa-GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 154376 0.7 0.524686
Target:  5'- uCUGUCgCgUCCUCGGUCGCCgcugCcgccaaucaggagGCGGGCa -3'
miRNA:   3'- -GGCAG-G-AGGGGCCAGCGGa---G-------------CGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 130063 0.7 0.525586
Target:  5'- aCGUCUUCCgCGGcCuGCuCUCGCuGGCc -3'
miRNA:   3'- gGCAGGAGGgGCCaG-CG-GAGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 214794 0.7 0.534619
Target:  5'- gCCGUCCUCUucaccgccgUCGGgCGCCgggCGC-GGCg -3'
miRNA:   3'- -GGCAGGAGG---------GGCCaGCGGa--GCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 43852 0.7 0.543707
Target:  5'- cCCGUCacaggcgCCCCGGcCGgCUCcCGGGCc -3'
miRNA:   3'- -GGCAGga-----GGGGCCaGCgGAGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 74315 0.7 0.549184
Target:  5'- gCCGUgCUCUUCGGUCGCCUgcacccucagcaccUGCAcgagaugaaacugGGCa -3'
miRNA:   3'- -GGCAgGAGGGGCCAGCGGA--------------GCGU-------------CCG- -5'
13947 3' -62.4 NC_003521.1 + 167109 0.7 0.551014
Target:  5'- gCCGgggacugaggagCCUCCCUGGggacuUCGCuuagaguaCUCGCAGGUg -3'
miRNA:   3'- -GGCa-----------GGAGGGGCC-----AGCG--------GAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 142254 0.71 0.481367
Target:  5'- cCCGcUCCUCCUCGGcCGaCUCGggcuCGGGCu -3'
miRNA:   3'- -GGC-AGGAGGGGCCaGCgGAGC----GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 117620 0.71 0.472737
Target:  5'- cCCGUCCUaCCCGG-CGCCguaUGC-GGCc -3'
miRNA:   3'- -GGCAGGAgGGGCCaGCGGa--GCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 210888 0.71 0.472737
Target:  5'- aCGUCg-CCUCGGUgGCCgUCGcCAGGCc -3'
miRNA:   3'- gGCAGgaGGGGCCAgCGG-AGC-GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 196757 0.75 0.287317
Target:  5'- aCCGUCUgcugCCCCGGcCGgCgcgacCGCGGGCg -3'
miRNA:   3'- -GGCAGGa---GGGGCCaGCgGa----GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 224718 0.74 0.368545
Target:  5'- aCGUCCcgCCCgUGGugcUCGCCgaCGCAGGCg -3'
miRNA:   3'- gGCAGGa-GGG-GCC---AGCGGa-GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 172041 0.73 0.383526
Target:  5'- gUGUCUaagUCCUCGGUgGUCUCGgCGGGCu -3'
miRNA:   3'- gGCAGG---AGGGGCCAgCGGAGC-GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 119884 0.73 0.391167
Target:  5'- uCgGUUCUCCUC-GUCGCCcCGCGGGUg -3'
miRNA:   3'- -GgCAGGAGGGGcCAGCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 135364 0.73 0.391167
Target:  5'- gCCGU-CUCCgCGGcgguuaUCGCC-CGCGGGCg -3'
miRNA:   3'- -GGCAgGAGGgGCC------AGCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 187999 0.73 0.406743
Target:  5'- gCUGUCgauCUCCaCCGccGUCuCCUCGCAGGCg -3'
miRNA:   3'- -GGCAG---GAGG-GGC--CAGcGGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 206695 0.72 0.439033
Target:  5'- cCCGUacaCCUCCCC-GUCGCgauacgUGCGGGCg -3'
miRNA:   3'- -GGCA---GGAGGGGcCAGCGga----GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 75586 0.71 0.472737
Target:  5'- cUCGUCCUCCUCuucCGCUUCGCguucGGGCg -3'
miRNA:   3'- -GGCAGGAGGGGccaGCGGAGCG----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.