Results 1 - 20 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13947 | 3' | -62.4 | NC_003521.1 | + | 196757 | 0.75 | 0.287317 |
Target: 5'- aCCGUCUgcugCCCCGGcCGgCgcgacCGCGGGCg -3' miRNA: 3'- -GGCAGGa---GGGGCCaGCgGa----GCGUCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 167109 | 0.7 | 0.551014 |
Target: 5'- gCCGgggacugaggagCCUCCCUGGggacuUCGCuuagaguaCUCGCAGGUg -3' miRNA: 3'- -GGCa-----------GGAGGGGCC-----AGCG--------GAGCGUCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 74315 | 0.7 | 0.549184 |
Target: 5'- gCCGUgCUCUUCGGUCGCCUgcacccucagcaccUGCAcgagaugaaacugGGCa -3' miRNA: 3'- -GGCAgGAGGGGCCAGCGGA--------------GCGU-------------CCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 43852 | 0.7 | 0.543707 |
Target: 5'- cCCGUCacaggcgCCCCGGcCGgCUCcCGGGCc -3' miRNA: 3'- -GGCAGga-----GGGGCCaGCgGAGcGUCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 214794 | 0.7 | 0.534619 |
Target: 5'- gCCGUCCUCUucaccgccgUCGGgCGCCgggCGC-GGCg -3' miRNA: 3'- -GGCAGGAGG---------GGCCaGCGGa--GCGuCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 130063 | 0.7 | 0.525586 |
Target: 5'- aCGUCUUCCgCGGcCuGCuCUCGCuGGCc -3' miRNA: 3'- gGCAGGAGGgGCCaG-CG-GAGCGuCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 154376 | 0.7 | 0.524686 |
Target: 5'- uCUGUCgCgUCCUCGGUCGCCgcugCcgccaaucaggagGCGGGCa -3' miRNA: 3'- -GGCAG-G-AGGGGCCAGCGGa---G-------------CGUCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 232188 | 0.71 | 0.49885 |
Target: 5'- aCCGUCCUCCCaCGccauggGCCccCGCGGGUg -3' miRNA: 3'- -GGCAGGAGGG-GCcag---CGGa-GCGUCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 226835 | 0.71 | 0.49885 |
Target: 5'- -gGUCCUCgCCCGccgccgCGCCggGCAGGCc -3' miRNA: 3'- ggCAGGAG-GGGCca----GCGGagCGUCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 142254 | 0.71 | 0.481367 |
Target: 5'- cCCGcUCCUCCUCGGcCGaCUCGggcuCGGGCu -3' miRNA: 3'- -GGC-AGGAGGGGCCaGCgGAGC----GUCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 117620 | 0.71 | 0.472737 |
Target: 5'- cCCGUCCUaCCCGG-CGCCguaUGC-GGCc -3' miRNA: 3'- -GGCAGGAgGGGCCaGCGGa--GCGuCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 210888 | 0.71 | 0.472737 |
Target: 5'- aCGUCg-CCUCGGUgGCCgUCGcCAGGCc -3' miRNA: 3'- gGCAGgaGGGGCCAgCGG-AGC-GUCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 75586 | 0.71 | 0.472737 |
Target: 5'- cUCGUCCUCCUCuucCGCUUCGCguucGGGCg -3' miRNA: 3'- -GGCAGGAGGGGccaGCGGAGCG----UCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 206695 | 0.72 | 0.439033 |
Target: 5'- cCCGUacaCCUCCCC-GUCGCgauacgUGCGGGCg -3' miRNA: 3'- -GGCA---GGAGGGGcCAGCGga----GCGUCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 187999 | 0.73 | 0.406743 |
Target: 5'- gCUGUCgauCUCCaCCGccGUCuCCUCGCAGGCg -3' miRNA: 3'- -GGCAG---GAGG-GGC--CAGcGGAGCGUCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 135364 | 0.73 | 0.391167 |
Target: 5'- gCCGU-CUCCgCGGcgguuaUCGCC-CGCGGGCg -3' miRNA: 3'- -GGCAgGAGGgGCC------AGCGGaGCGUCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 119884 | 0.73 | 0.391167 |
Target: 5'- uCgGUUCUCCUC-GUCGCCcCGCGGGUg -3' miRNA: 3'- -GgCAGGAGGGGcCAGCGGaGCGUCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 172041 | 0.73 | 0.383526 |
Target: 5'- gUGUCUaagUCCUCGGUgGUCUCGgCGGGCu -3' miRNA: 3'- gGCAGG---AGGGGCCAgCGGAGC-GUCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 224718 | 0.74 | 0.368545 |
Target: 5'- aCGUCCcgCCCgUGGugcUCGCCgaCGCAGGCg -3' miRNA: 3'- gGCAGGa-GGG-GCC---AGCGGa-GCGUCCG- -5' |
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13947 | 3' | -62.4 | NC_003521.1 | + | 209384 | 0.78 | 0.197269 |
Target: 5'- gUCGUCCUCCCCGuaGUCGUCUUcgGCGGcGCa -3' miRNA: 3'- -GGCAGGAGGGGC--CAGCGGAG--CGUC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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