miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 16844 1.12 0.00097
Target:  5'- uCCGUCCUCCCCGGUCGCCUCGCAGGCg -3'
miRNA:   3'- -GGCAGGAGGGGCCAGCGGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 910 0.68 0.645896
Target:  5'- gCGUCC-CCCCGGggccCGuccuuucuccuCCUUGCAGuGCg -3'
miRNA:   3'- gGCAGGaGGGGCCa---GC-----------GGAGCGUC-CG- -5'
13947 3' -62.4 NC_003521.1 + 137503 0.68 0.655249
Target:  5'- gCCGUCggCCCCGGcCGgUgCGCGGGg -3'
miRNA:   3'- -GGCAGgaGGGGCCaGCgGaGCGUCCg -5'
13947 3' -62.4 NC_003521.1 + 180813 0.66 0.806324
Target:  5'- gCG-CCaCCCCGGUaCGCCgcggagaCGguGGUg -3'
miRNA:   3'- gGCaGGaGGGGCCA-GCGGa------GCguCCG- -5'
13947 3' -62.4 NC_003521.1 + 92349 0.71 0.47877
Target:  5'- aCCGcCCUgcgcaccccccgacCCCCGGUcCGCCaUCGCuacgggAGGCa -3'
miRNA:   3'- -GGCaGGA--------------GGGGCCA-GCGG-AGCG------UCCG- -5'
13947 3' -62.4 NC_003521.1 + 218701 0.71 0.481367
Target:  5'- aUGUCCUCCgUGGUgcCGCCgcugUCGCuGGCc -3'
miRNA:   3'- gGCAGGAGGgGCCA--GCGG----AGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 130139 0.7 0.534619
Target:  5'- uCC-UCCUCCCCGGcCGUCacccacucgUCGCAGuaGCa -3'
miRNA:   3'- -GGcAGGAGGGGCCaGCGG---------AGCGUC--CG- -5'
13947 3' -62.4 NC_003521.1 + 176193 0.7 0.543707
Target:  5'- uCUGUCCUCCuCCGG-CuCCUCGggcCAGGUc -3'
miRNA:   3'- -GGCAGGAGG-GGCCaGcGGAGC---GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 131351 0.7 0.571252
Target:  5'- gCCGUCCggagCCCgcgcgagccgCGGUCGCCgccaccgCGUccgAGGCc -3'
miRNA:   3'- -GGCAGGa---GGG----------GCCAGCGGa------GCG---UCCG- -5'
13947 3' -62.4 NC_003521.1 + 115061 0.68 0.645896
Target:  5'- -aGUCCaugaUCCCgaaGGUCGUgUCGcCGGGCu -3'
miRNA:   3'- ggCAGG----AGGGg--CCAGCGgAGC-GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 189407 0.69 0.607523
Target:  5'- aCGUugaCCUaCCCCGGUacuccacuuacucCGCCU-GCAGGUa -3'
miRNA:   3'- gGCA---GGA-GGGGCCA-------------GCGGAgCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 135659 0.7 0.552845
Target:  5'- cCCGcCCgCCUCGGcacgguuuggCGCC-CGCGGGCg -3'
miRNA:   3'- -GGCaGGaGGGGCCa---------GCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 42333 0.77 0.241423
Target:  5'- gCCGUgCUCgCUGGUCGCgccgCUCGUGGGCg -3'
miRNA:   3'- -GGCAgGAGgGGCCAGCG----GAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 18350 0.69 0.617809
Target:  5'- uCCGUCC-CCgCGGccgUCGUCUC-CAGGUc -3'
miRNA:   3'- -GGCAGGaGGgGCC---AGCGGAGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 29647 0.73 0.375985
Target:  5'- gUCGUCCUCCUCG---GCCUCGCggucgGGGCa -3'
miRNA:   3'- -GGCAGGAGGGGCcagCGGAGCG-----UCCG- -5'
13947 3' -62.4 NC_003521.1 + 89430 0.7 0.552845
Target:  5'- gCCGcucgUCUCCCCGGggcuugcgguuuUUGUC-CGCGGGCg -3'
miRNA:   3'- -GGCa---GGAGGGGCC------------AGCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 121204 0.69 0.627171
Target:  5'- cCUGccCCUCgCCGGagcCGCCgcCGCGGGCa -3'
miRNA:   3'- -GGCa-GGAGgGGCCa--GCGGa-GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 158841 0.68 0.655249
Target:  5'- uCgGUagaCUUCUCaGaguuUCGCCUCGCAGGCg -3'
miRNA:   3'- -GgCAg--GAGGGGcC----AGCGGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 146916 0.72 0.439033
Target:  5'- gCCGUCCUCCUCGccGUCGUCgUgGCcgGGGCc -3'
miRNA:   3'- -GGCAGGAGGGGC--CAGCGG-AgCG--UCCG- -5'
13947 3' -62.4 NC_003521.1 + 97784 0.7 0.534619
Target:  5'- gUCGUCuCUCUCCguGGUCGCC-CGC-GGUa -3'
miRNA:   3'- -GGCAG-GAGGGG--CCAGCGGaGCGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.