miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 356 0.67 0.737923
Target:  5'- uUCGgCCUCCCUGcaCGCC-CGC-GGCa -3'
miRNA:   3'- -GGCaGGAGGGGCcaGCGGaGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 910 0.68 0.645896
Target:  5'- gCGUCC-CCCCGGggccCGuccuuucuccuCCUUGCAGuGCg -3'
miRNA:   3'- gGCAGGaGGGGCCa---GC-----------GGAGCGUC-CG- -5'
13947 3' -62.4 NC_003521.1 + 1720 0.68 0.664586
Target:  5'- uCCGUCCccuugUCCgCUGGUUGCUagGC-GGCg -3'
miRNA:   3'- -GGCAGG-----AGG-GGCCAGCGGagCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 3676 0.67 0.746817
Target:  5'- -gGUCUgaguggccccaUCCCCGGaUGCCggCGuCGGGCg -3'
miRNA:   3'- ggCAGG-----------AGGGGCCaGCGGa-GC-GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 4331 0.68 0.6739
Target:  5'- aCCGUCCaUgCCUGG-CGCCaccgcCGCcGGCg -3'
miRNA:   3'- -GGCAGG-AgGGGCCaGCGGa----GCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 4507 0.66 0.806324
Target:  5'- cUCGUCCUCCUccccgucuCGGUCcuCCUCcCGGGg -3'
miRNA:   3'- -GGCAGGAGGG--------GCCAGc-GGAGcGUCCg -5'
13947 3' -62.4 NC_003521.1 + 5485 0.66 0.806324
Target:  5'- cCCGUUCcCCCCuuagaucuGGcCGUCUCgGCAGGa -3'
miRNA:   3'- -GGCAGGaGGGG--------CCaGCGGAG-CGUCCg -5'
13947 3' -62.4 NC_003521.1 + 14115 0.68 0.6739
Target:  5'- cCCaUCCUCCCCuccGGUCGUCacauUC-CAGGUg -3'
miRNA:   3'- -GGcAGGAGGGG---CCAGCGG----AGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 16843 0.68 0.645896
Target:  5'- aCCGUCCUCgCCGG------CGCAGGCg -3'
miRNA:   3'- -GGCAGGAGgGGCCagcggaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 16844 1.12 0.00097
Target:  5'- uCCGUCCUCCCCGGUCGCCUCGCAGGCg -3'
miRNA:   3'- -GGCAGGAGGGGCCAGCGGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 18350 0.69 0.617809
Target:  5'- uCCGUCC-CCgCGGccgUCGUCUC-CAGGUc -3'
miRNA:   3'- -GGCAGGaGGgGCC---AGCGGAGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 19094 0.69 0.598187
Target:  5'- gCCG-CCUCUCgcgguugCGGUCGCUcagcaUCuGCAGGCa -3'
miRNA:   3'- -GGCaGGAGGG-------GCCAGCGG-----AG-CGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 29647 0.73 0.375985
Target:  5'- gUCGUCCUCCUCG---GCCUCGCggucgGGGCa -3'
miRNA:   3'- -GGCAGGAGGGGCcagCGGAGCG-----UCCG- -5'
13947 3' -62.4 NC_003521.1 + 30075 0.66 0.806324
Target:  5'- gCCGUCC-CCgCCGGcCGCUcacgguaGCAGcGCc -3'
miRNA:   3'- -GGCAGGaGG-GGCCaGCGGag-----CGUC-CG- -5'
13947 3' -62.4 NC_003521.1 + 30830 0.66 0.78148
Target:  5'- cCCGcgaaCUCCaCGGgCGCCUUGCGacGGCa -3'
miRNA:   3'- -GGCag--GAGGgGCCaGCGGAGCGU--CCG- -5'
13947 3' -62.4 NC_003521.1 + 31272 0.68 0.692438
Target:  5'- gCGUCCUCgCCGG-CGCCgUCGUc-GCc -3'
miRNA:   3'- gGCAGGAGgGGCCaGCGG-AGCGucCG- -5'
13947 3' -62.4 NC_003521.1 + 31825 0.69 0.589803
Target:  5'- gCCGUCuCggCCCGGgCGCCgaaGguGGCg -3'
miRNA:   3'- -GGCAG-GagGGGCCaGCGGag-CguCCG- -5'
13947 3' -62.4 NC_003521.1 + 31973 0.68 0.668314
Target:  5'- gCCGUCCagccgcauguacagcUCCUCGGUCaacgugcacaGCUgcCGCAGGUa -3'
miRNA:   3'- -GGCAGG---------------AGGGGCCAG----------CGGa-GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 34690 0.68 0.645896
Target:  5'- -aGUCCUCCUg---CGCgUCGUAGGCg -3'
miRNA:   3'- ggCAGGAGGGgccaGCGgAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 36751 0.66 0.803891
Target:  5'- cCCuUCCUCUCgcuguccaaggacgCGcGUgGCCUgGCGGGCg -3'
miRNA:   3'- -GGcAGGAGGG--------------GC-CAgCGGAgCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.