miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 30075 0.66 0.806324
Target:  5'- gCCGUCC-CCgCCGGcCGCUcacgguaGCAGcGCc -3'
miRNA:   3'- -GGCAGGaGG-GGCCaGCGGag-----CGUC-CG- -5'
13947 3' -62.4 NC_003521.1 + 177455 0.66 0.755626
Target:  5'- uCCGUCCgcgauaUCCCCGacuaUCGUauguaUCGCGcGGCg -3'
miRNA:   3'- -GGCAGG------AGGGGCc---AGCGg----AGCGU-CCG- -5'
13947 3' -62.4 NC_003521.1 + 236543 0.66 0.798166
Target:  5'- -gGUCCUUCCC--UCGCUUCuCAGGUu -3'
miRNA:   3'- ggCAGGAGGGGccAGCGGAGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 92040 0.66 0.789883
Target:  5'- -gGUCCgggggUCCCCGGggUGCCUCccguaGCGauGGCg -3'
miRNA:   3'- ggCAGG-----AGGGGCCa-GCGGAG-----CGU--CCG- -5'
13947 3' -62.4 NC_003521.1 + 152599 0.66 0.803891
Target:  5'- aCGauggCCUCCUCGG-CGCCcuggUuggucaccaggcggCGCAGGCg -3'
miRNA:   3'- gGCa---GGAGGGGCCaGCGG----A--------------GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 72568 0.66 0.78148
Target:  5'- gCGaCCUCUCaGcGUCGCCaUCGCAaccGGCg -3'
miRNA:   3'- gGCaGGAGGGgC-CAGCGG-AGCGU---CCG- -5'
13947 3' -62.4 NC_003521.1 + 180813 0.66 0.806324
Target:  5'- gCG-CCaCCCCGGUaCGCCgcggagaCGguGGUg -3'
miRNA:   3'- gGCaGGaGGGGCCA-GCGGa------GCguCCG- -5'
13947 3' -62.4 NC_003521.1 + 36751 0.66 0.803891
Target:  5'- cCCuUCCUCUCgcuguccaaggacgCGcGUgGCCUgGCGGGCg -3'
miRNA:   3'- -GGcAGGAGGG--------------GC-CAgCGGAgCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 223016 0.66 0.78148
Target:  5'- gUCGUCgUCCgCCGGUCGCaCggccaGCAcGCc -3'
miRNA:   3'- -GGCAGgAGG-GGCCAGCG-Gag---CGUcCG- -5'
13947 3' -62.4 NC_003521.1 + 224076 0.66 0.755626
Target:  5'- cUCGUCCUCCggCGGgcgCGCg-CGCcGGCg -3'
miRNA:   3'- -GGCAGGAGGg-GCCa--GCGgaGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 157556 0.66 0.763477
Target:  5'- cCCG-CCUCCCCccguacgcGGcCGCCgUUGCcccggaaAGGCg -3'
miRNA:   3'- -GGCaGGAGGGG--------CCaGCGG-AGCG-------UCCG- -5'
13947 3' -62.4 NC_003521.1 + 5485 0.66 0.806324
Target:  5'- cCCGUUCcCCCCuuagaucuGGcCGUCUCgGCAGGa -3'
miRNA:   3'- -GGCAGGaGGGG--------CCaGCGGAG-CGUCCg -5'
13947 3' -62.4 NC_003521.1 + 235845 0.66 0.755626
Target:  5'- cUCGUCCU-CCCGcaCGUCcCGCGGGUu -3'
miRNA:   3'- -GGCAGGAgGGGCcaGCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 142535 0.66 0.795694
Target:  5'- uCC-UCUUCCCUGaggagugacggcuuGUCGCC-CGCcAGGCu -3'
miRNA:   3'- -GGcAGGAGGGGC--------------CAGCGGaGCG-UCCG- -5'
13947 3' -62.4 NC_003521.1 + 127288 0.66 0.798166
Target:  5'- aCGUCCgacacgCCgUGGUggcgCGCCUCGauguuGGCg -3'
miRNA:   3'- gGCAGGa-----GGgGCCA----GCGGAGCgu---CCG- -5'
13947 3' -62.4 NC_003521.1 + 135017 0.66 0.772965
Target:  5'- gUCGcCCUUCUCGGUgaaGCUgUGCAGGUg -3'
miRNA:   3'- -GGCaGGAGGGGCCAg--CGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 106852 0.66 0.755626
Target:  5'- aCgGUCCUCaccgaCCGGaUCGaCUCGCAGa- -3'
miRNA:   3'- -GgCAGGAGg----GGCC-AGCgGAGCGUCcg -5'
13947 3' -62.4 NC_003521.1 + 123177 0.66 0.755626
Target:  5'- aCCGUCU--CgCGG-CGCagUCGCAGGCg -3'
miRNA:   3'- -GGCAGGagGgGCCaGCGg-AGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 72692 0.66 0.806324
Target:  5'- cCCGUCCaCCCaCGG-CGCUgUCGUccucGGCg -3'
miRNA:   3'- -GGCAGGaGGG-GCCaGCGG-AGCGu---CCG- -5'
13947 3' -62.4 NC_003521.1 + 30830 0.66 0.78148
Target:  5'- cCCGcgaaCUCCaCGGgCGCCUUGCGacGGCa -3'
miRNA:   3'- -GGCag--GAGGgGCCaGCGGAGCGU--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.