miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 100765 0.66 0.806324
Target:  5'- aCCGUCCgacgCCCgCGGUgcCaCCUgGC-GGCg -3'
miRNA:   3'- -GGCAGGa---GGG-GCCA--GcGGAgCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 88917 0.66 0.798166
Target:  5'- aCCGaCCUggcggCCCUcugCGCCUCGCuGGGCu -3'
miRNA:   3'- -GGCaGGA-----GGGGccaGCGGAGCG-UCCG- -5'
13947 3' -62.4 NC_003521.1 + 213164 0.66 0.805514
Target:  5'- gCCGUCCUcgaguccaccgacCCCCcGUCGCC-CGCGu-- -3'
miRNA:   3'- -GGCAGGA-------------GGGGcCAGCGGaGCGUccg -5'
13947 3' -62.4 NC_003521.1 + 141409 0.66 0.772965
Target:  5'- gCCGUUCUUCUCGcg-GCCgaaacaggugUCGCGGGCg -3'
miRNA:   3'- -GGCAGGAGGGGCcagCGG----------AGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 180813 0.66 0.806324
Target:  5'- gCG-CCaCCCCGGUaCGCCgcggagaCGguGGUg -3'
miRNA:   3'- gGCaGGaGGGGCCA-GCGGa------GCguCCG- -5'
13947 3' -62.4 NC_003521.1 + 77893 0.66 0.78148
Target:  5'- gUCGaUCCUCUcggCCGG-CGCCgUCaCGGGCg -3'
miRNA:   3'- -GGC-AGGAGG---GGCCaGCGG-AGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 126067 0.66 0.78148
Target:  5'- aCGgCCacgcacaacCCCUGG--GCCUCGCAGGCc -3'
miRNA:   3'- gGCaGGa--------GGGGCCagCGGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 106852 0.66 0.755626
Target:  5'- aCgGUCCUCaccgaCCGGaUCGaCUCGCAGa- -3'
miRNA:   3'- -GgCAGGAGg----GGCC-AGCgGAGCGUCcg -5'
13947 3' -62.4 NC_003521.1 + 152599 0.66 0.803891
Target:  5'- aCGauggCCUCCUCGG-CGCCcuggUuggucaccaggcggCGCAGGCg -3'
miRNA:   3'- gGCa---GGAGGGGCCaGCGG----A--------------GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 235845 0.66 0.755626
Target:  5'- cUCGUCCU-CCCGcaCGUCcCGCGGGUu -3'
miRNA:   3'- -GGCAGGAgGGGCcaGCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 4507 0.66 0.806324
Target:  5'- cUCGUCCUCCUccccgucuCGGUCcuCCUCcCGGGg -3'
miRNA:   3'- -GGCAGGAGGG--------GCCAGc-GGAGcGUCCg -5'
13947 3' -62.4 NC_003521.1 + 132655 0.66 0.806324
Target:  5'- gCGUCUg--CCGGaUGaCCUCGCGGGUg -3'
miRNA:   3'- gGCAGGaggGGCCaGC-GGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 128416 0.66 0.78148
Target:  5'- aCGcCCUgCCUgcaGGccuUCGCCgagCGCGGGCc -3'
miRNA:   3'- gGCaGGAgGGG---CC---AGCGGa--GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 123177 0.66 0.755626
Target:  5'- aCCGUCU--CgCGG-CGCagUCGCAGGCg -3'
miRNA:   3'- -GGCAGGagGgGCCaGCGg-AGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 211382 0.66 0.798166
Target:  5'- gCGUCCUCggcgCCUGGcugcugaGCCUCGgcgcgacggaCAGGCa -3'
miRNA:   3'- gGCAGGAG----GGGCCag-----CGGAGC----------GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 150172 0.66 0.78148
Target:  5'- aUCGUCCUCgUCGGagGaggggugggCGCGGGCg -3'
miRNA:   3'- -GGCAGGAGgGGCCagCgga------GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 157556 0.66 0.763477
Target:  5'- cCCG-CCUCCCCccguacgcGGcCGCCgUUGCcccggaaAGGCg -3'
miRNA:   3'- -GGCaGGAGGGG--------CCaGCGG-AGCG-------UCCG- -5'
13947 3' -62.4 NC_003521.1 + 92153 0.67 0.719911
Target:  5'- cCCGgcUCCuUCCaCCGGcUCGCC-CGgGGGUc -3'
miRNA:   3'- -GGC--AGG-AGG-GGCC-AGCGGaGCgUCCG- -5'
13947 3' -62.4 NC_003521.1 + 50138 0.67 0.719911
Target:  5'- cCCGUCuccuCUCCCCGG-CGUaguaaUCG-GGGCa -3'
miRNA:   3'- -GGCAG----GAGGGGCCaGCGg----AGCgUCCG- -5'
13947 3' -62.4 NC_003521.1 + 160314 0.67 0.737923
Target:  5'- gCCG-CCUCCCCGGg-GUCaUCGUuguGGUu -3'
miRNA:   3'- -GGCaGGAGGGGCCagCGG-AGCGu--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.