miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 154376 0.7 0.524686
Target:  5'- uCUGUCgCgUCCUCGGUCGCCgcugCcgccaaucaggagGCGGGCa -3'
miRNA:   3'- -GGCAG-G-AGGGGCCAGCGGa---G-------------CGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 130063 0.7 0.525586
Target:  5'- aCGUCUUCCgCGGcCuGCuCUCGCuGGCc -3'
miRNA:   3'- gGCAGGAGGgGCCaG-CG-GAGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 214794 0.7 0.534619
Target:  5'- gCCGUCCUCUucaccgccgUCGGgCGCCgggCGC-GGCg -3'
miRNA:   3'- -GGCAGGAGG---------GGCCaGCGGa--GCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 97784 0.7 0.534619
Target:  5'- gUCGUCuCUCUCCguGGUCGCC-CGC-GGUa -3'
miRNA:   3'- -GGCAG-GAGGGG--CCAGCGGaGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 130139 0.7 0.534619
Target:  5'- uCC-UCCUCCCCGGcCGUCacccacucgUCGCAGuaGCa -3'
miRNA:   3'- -GGcAGGAGGGGCCaGCGG---------AGCGUC--CG- -5'
13947 3' -62.4 NC_003521.1 + 176193 0.7 0.543707
Target:  5'- uCUGUCCUCCuCCGG-CuCCUCGggcCAGGUc -3'
miRNA:   3'- -GGCAGGAGG-GGCCaGcGGAGC---GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 43852 0.7 0.543707
Target:  5'- cCCGUCacaggcgCCCCGGcCGgCUCcCGGGCc -3'
miRNA:   3'- -GGCAGga-----GGGGCCaGCgGAGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 74315 0.7 0.549184
Target:  5'- gCCGUgCUCUUCGGUCGCCUgcacccucagcaccUGCAcgagaugaaacugGGCa -3'
miRNA:   3'- -GGCAgGAGGGGCCAGCGGA--------------GCGU-------------CCG- -5'
13947 3' -62.4 NC_003521.1 + 167109 0.7 0.551014
Target:  5'- gCCGgggacugaggagCCUCCCUGGggacuUCGCuuagaguaCUCGCAGGUg -3'
miRNA:   3'- -GGCa-----------GGAGGGGCC-----AGCG--------GAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 92660 0.7 0.552845
Target:  5'- cCCaUCC-CCCCGGUCgagcaGCCUCgGCgAGGUg -3'
miRNA:   3'- -GGcAGGaGGGGCCAG-----CGGAG-CG-UCCG- -5'
13947 3' -62.4 NC_003521.1 + 89430 0.7 0.552845
Target:  5'- gCCGcucgUCUCCCCGGggcuugcgguuuUUGUC-CGCGGGCg -3'
miRNA:   3'- -GGCa---GGAGGGGCC------------AGCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 135659 0.7 0.552845
Target:  5'- cCCGcCCgCCUCGGcacgguuuggCGCC-CGCGGGCg -3'
miRNA:   3'- -GGCaGGaGGGGCCa---------GCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 160260 0.7 0.571252
Target:  5'- gCGcUUCUCCCgGGUUGCCU-GguGGUa -3'
miRNA:   3'- gGC-AGGAGGGgCCAGCGGAgCguCCG- -5'
13947 3' -62.4 NC_003521.1 + 131351 0.7 0.571252
Target:  5'- gCCGUCCggagCCCgcgcgagccgCGGUCGCCgccaccgCGUccgAGGCc -3'
miRNA:   3'- -GGCAGGa---GGG----------GCCAGCGGa------GCG---UCCG- -5'
13947 3' -62.4 NC_003521.1 + 93676 0.7 0.580512
Target:  5'- cCUGUCCcggaCCCCGGUCGgCCUUuu-GGCu -3'
miRNA:   3'- -GGCAGGa---GGGGCCAGC-GGAGcguCCG- -5'
13947 3' -62.4 NC_003521.1 + 118910 0.7 0.580512
Target:  5'- cUCGcCCUCgUCGG-CGCCgcggCGUGGGCg -3'
miRNA:   3'- -GGCaGGAGgGGCCaGCGGa---GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 31825 0.69 0.589803
Target:  5'- gCCGUCuCggCCCGGgCGCCgaaGguGGCg -3'
miRNA:   3'- -GGCAG-GagGGGCCaGCGGag-CguCCG- -5'
13947 3' -62.4 NC_003521.1 + 19094 0.69 0.598187
Target:  5'- gCCG-CCUCUCgcgguugCGGUCGCUcagcaUCuGCAGGCa -3'
miRNA:   3'- -GGCaGGAGGG-------GCCAGCGG-----AG-CGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 153431 0.69 0.59912
Target:  5'- -gGUCagcagCagCCGGUCGCgCUCGUAGGCc -3'
miRNA:   3'- ggCAGga---Gg-GGCCAGCG-GAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 189407 0.69 0.607523
Target:  5'- aCGUugaCCUaCCCCGGUacuccacuuacucCGCCU-GCAGGUa -3'
miRNA:   3'- gGCA---GGA-GGGGCCA-------------GCGGAgCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.