miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 77893 0.66 0.78148
Target:  5'- gUCGaUCCUCUcggCCGG-CGCCgUCaCGGGCg -3'
miRNA:   3'- -GGC-AGGAGG---GGCCaGCGG-AGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 128416 0.66 0.78148
Target:  5'- aCGcCCUgCCUgcaGGccuUCGCCgagCGCGGGCc -3'
miRNA:   3'- gGCaGGAgGGG---CC---AGCGGa--GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 72568 0.66 0.78148
Target:  5'- gCGaCCUCUCaGcGUCGCCaUCGCAaccGGCg -3'
miRNA:   3'- gGCaGGAGGGgC-CAGCGG-AGCGU---CCG- -5'
13947 3' -62.4 NC_003521.1 + 223016 0.66 0.78148
Target:  5'- gUCGUCgUCCgCCGGUCGCaCggccaGCAcGCc -3'
miRNA:   3'- -GGCAGgAGG-GGCCAGCG-Gag---CGUcCG- -5'
13947 3' -62.4 NC_003521.1 + 126067 0.66 0.78148
Target:  5'- aCGgCCacgcacaacCCCUGG--GCCUCGCAGGCc -3'
miRNA:   3'- gGCaGGa--------GGGGCCagCGGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 150172 0.66 0.78148
Target:  5'- aUCGUCCUCgUCGGagGaggggugggCGCGGGCg -3'
miRNA:   3'- -GGCAGGAGgGGCCagCgga------GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 135017 0.66 0.772965
Target:  5'- gUCGcCCUUCUCGGUgaaGCUgUGCAGGUg -3'
miRNA:   3'- -GGCaGGAGGGGCCAg--CGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 141409 0.66 0.772965
Target:  5'- gCCGUUCUUCUCGcg-GCCgaaacaggugUCGCGGGCg -3'
miRNA:   3'- -GGCAGGAGGGGCcagCGG----------AGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 105404 0.66 0.772965
Target:  5'- cUCGUCCUgggggaCCUCGGgggucUGCCUCaGgAGGCu -3'
miRNA:   3'- -GGCAGGA------GGGGCCa----GCGGAG-CgUCCG- -5'
13947 3' -62.4 NC_003521.1 + 120075 0.66 0.764345
Target:  5'- gCGUgCgcaCCaCCGuGUCGCCcCGCuGGCg -3'
miRNA:   3'- gGCAgGa--GG-GGC-CAGCGGaGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 157556 0.66 0.763477
Target:  5'- cCCG-CCUCCCCccguacgcGGcCGCCgUUGCcccggaaAGGCg -3'
miRNA:   3'- -GGCaGGAGGGG--------CCaGCGG-AGCG-------UCCG- -5'
13947 3' -62.4 NC_003521.1 + 149170 0.66 0.755626
Target:  5'- gUCGUCCgUCUCGGcgCGCgUCGCcaccGGCg -3'
miRNA:   3'- -GGCAGGaGGGGCCa-GCGgAGCGu---CCG- -5'
13947 3' -62.4 NC_003521.1 + 224076 0.66 0.755626
Target:  5'- cUCGUCCUCCggCGGgcgCGCg-CGCcGGCg -3'
miRNA:   3'- -GGCAGGAGGg-GCCa--GCGgaGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 123177 0.66 0.755626
Target:  5'- aCCGUCU--CgCGG-CGCagUCGCAGGCg -3'
miRNA:   3'- -GGCAGGagGgGCCaGCGg-AGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 235845 0.66 0.755626
Target:  5'- cUCGUCCU-CCCGcaCGUCcCGCGGGUu -3'
miRNA:   3'- -GGCAGGAgGGGCcaGCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 106852 0.66 0.755626
Target:  5'- aCgGUCCUCaccgaCCGGaUCGaCUCGCAGa- -3'
miRNA:   3'- -GgCAGGAGg----GGCC-AGCgGAGCGUCcg -5'
13947 3' -62.4 NC_003521.1 + 177455 0.66 0.755626
Target:  5'- uCCGUCCgcgauaUCCCCGacuaUCGUauguaUCGCGcGGCg -3'
miRNA:   3'- -GGCAGG------AGGGGCc---AGCGg----AGCGU-CCG- -5'
13947 3' -62.4 NC_003521.1 + 126975 0.67 0.746817
Target:  5'- gCCGUCgUCgCCGGcCGCCcCGCugccGCu -3'
miRNA:   3'- -GGCAGgAGgGGCCaGCGGaGCGuc--CG- -5'
13947 3' -62.4 NC_003521.1 + 46240 0.67 0.746817
Target:  5'- uCUGUCgCacggCCUCGacGUCGcCCUCGguGGCg -3'
miRNA:   3'- -GGCAG-Ga---GGGGC--CAGC-GGAGCguCCG- -5'
13947 3' -62.4 NC_003521.1 + 54076 0.67 0.746817
Target:  5'- gCCG-CCgagCCCCagcaugGGcUCGCCUaGCAGGUc -3'
miRNA:   3'- -GGCaGGa--GGGG------CC-AGCGGAgCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.