miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 18350 0.69 0.617809
Target:  5'- uCCGUCC-CCgCGGccgUCGUCUC-CAGGUc -3'
miRNA:   3'- -GGCAGGaGGgGCC---AGCGGAGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 187553 0.69 0.627171
Target:  5'- cCCGUCCUCCUucaGGucuuuuUCGCCaagucCGCGGGg -3'
miRNA:   3'- -GGCAGGAGGGg--CC------AGCGGa----GCGUCCg -5'
13947 3' -62.4 NC_003521.1 + 116301 0.69 0.627171
Target:  5'- uUCGUCCccuucuUCCUCcGUCGUCUaCGUGGGCg -3'
miRNA:   3'- -GGCAGG------AGGGGcCAGCGGA-GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 121204 0.69 0.627171
Target:  5'- cCUGccCCUCgCCGGagcCGCCgcCGCGGGCa -3'
miRNA:   3'- -GGCa-GGAGgGGCCa--GCGGa-GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 210416 0.69 0.627171
Target:  5'- uUCGUCUgUCCCC-GUCaggGCCUaCGCAGGUu -3'
miRNA:   3'- -GGCAGG-AGGGGcCAG---CGGA-GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 164933 0.69 0.627171
Target:  5'- aCCGggccCCUCCuCCGGcggcUCGCgUCGCcggagaGGGCc -3'
miRNA:   3'- -GGCa---GGAGG-GGCC----AGCGgAGCG------UCCG- -5'
13947 3' -62.4 NC_003521.1 + 197258 0.69 0.635599
Target:  5'- cCCGUCC-CCCCagucagcGGcCGCCucugUCGC-GGCg -3'
miRNA:   3'- -GGCAGGaGGGG-------CCaGCGG----AGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 123113 0.69 0.636535
Target:  5'- aCCGUCCUCgCCGGgcCGCUguacgaaGUAcGGCa -3'
miRNA:   3'- -GGCAGGAGgGGCCa-GCGGag-----CGU-CCG- -5'
13947 3' -62.4 NC_003521.1 + 16843 0.68 0.645896
Target:  5'- aCCGUCCUCgCCGG------CGCAGGCg -3'
miRNA:   3'- -GGCAGGAGgGGCCagcggaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 199856 0.68 0.645896
Target:  5'- gCGUCC-CCCCGGggccCGuccuuucuccuCCUUGCAGuGCg -3'
miRNA:   3'- gGCAGGaGGGGCCa---GC-----------GGAGCGUC-CG- -5'
13947 3' -62.4 NC_003521.1 + 34690 0.68 0.645896
Target:  5'- -aGUCCUCCUg---CGCgUCGUAGGCg -3'
miRNA:   3'- ggCAGGAGGGgccaGCGgAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 115061 0.68 0.645896
Target:  5'- -aGUCCaugaUCCCgaaGGUCGUgUCGcCGGGCu -3'
miRNA:   3'- ggCAGG----AGGGg--CCAGCGgAGC-GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 910 0.68 0.645896
Target:  5'- gCGUCC-CCCCGGggccCGuccuuucuccuCCUUGCAGuGCg -3'
miRNA:   3'- gGCAGGaGGGGCCa---GC-----------GGAGCGUC-CG- -5'
13947 3' -62.4 NC_003521.1 + 158841 0.68 0.655249
Target:  5'- uCgGUagaCUUCUCaGaguuUCGCCUCGCAGGCg -3'
miRNA:   3'- -GgCAg--GAGGGGcC----AGCGGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 137503 0.68 0.655249
Target:  5'- gCCGUCggCCCCGGcCGgUgCGCGGGg -3'
miRNA:   3'- -GGCAGgaGGGGCCaGCgGaGCGUCCg -5'
13947 3' -62.4 NC_003521.1 + 179350 0.68 0.662719
Target:  5'- uUCGUCCUCCCCuuucccgaaaccGUaCGCgUCGCucGGCu -3'
miRNA:   3'- -GGCAGGAGGGGc-----------CA-GCGgAGCGu-CCG- -5'
13947 3' -62.4 NC_003521.1 + 168961 0.68 0.664586
Target:  5'- gCCGUCgCUCCCgCugcuGUCGCCgacgcgcgucggUCGCGGGa -3'
miRNA:   3'- -GGCAG-GAGGG-Gc---CAGCGG------------AGCGUCCg -5'
13947 3' -62.4 NC_003521.1 + 203392 0.68 0.664586
Target:  5'- gUCG-CCUCagguCCCGGccaCGCCUCcCAGGCc -3'
miRNA:   3'- -GGCaGGAG----GGGCCa--GCGGAGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 1720 0.68 0.664586
Target:  5'- uCCGUCCccuugUCCgCUGGUUGCUagGC-GGCg -3'
miRNA:   3'- -GGCAGG-----AGG-GGCCAGCGGagCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 31973 0.68 0.668314
Target:  5'- gCCGUCCagccgcauguacagcUCCUCGGUCaacgugcacaGCUgcCGCAGGUa -3'
miRNA:   3'- -GGCAGG---------------AGGGGCCAG----------CGGa-GCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.