miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 187081 0.68 0.6739
Target:  5'- aCCGUCagaUCUGGUCGCCcaCGCcguGGCg -3'
miRNA:   3'- -GGCAGgagGGGCCAGCGGa-GCGu--CCG- -5'
13947 3' -62.4 NC_003521.1 + 137503 0.68 0.655249
Target:  5'- gCCGUCggCCCCGGcCGgUgCGCGGGg -3'
miRNA:   3'- -GGCAGgaGGGGCCaGCgGaGCGUCCg -5'
13947 3' -62.4 NC_003521.1 + 135659 0.7 0.552845
Target:  5'- cCCGcCCgCCUCGGcacgguuuggCGCC-CGCGGGCg -3'
miRNA:   3'- -GGCaGGaGGGGCCa---------GCGGaGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 146916 0.72 0.439033
Target:  5'- gCCGUCCUCCUCGccGUCGUCgUgGCcgGGGCc -3'
miRNA:   3'- -GGCAGGAGGGGC--CAGCGG-AgCG--UCCG- -5'
13947 3' -62.4 NC_003521.1 + 240905 0.67 0.737923
Target:  5'- uUCGgCCUCCCUGcaCGCC-CGC-GGCa -3'
miRNA:   3'- -GGCaGGAGGGGCcaGCGGaGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 220317 0.67 0.719911
Target:  5'- gCUGUCCUUCCUGG-CGUUggCGCugucGGGCc -3'
miRNA:   3'- -GGCAGGAGGGGCCaGCGGa-GCG----UCCG- -5'
13947 3' -62.4 NC_003521.1 + 910 0.68 0.645896
Target:  5'- gCGUCC-CCCCGGggccCGuccuuucuccuCCUUGCAGuGCg -3'
miRNA:   3'- gGCAGGaGGGGCCa---GC-----------GGAGCGUC-CG- -5'
13947 3' -62.4 NC_003521.1 + 29647 0.73 0.375985
Target:  5'- gUCGUCCUCCUCG---GCCUCGCggucgGGGCa -3'
miRNA:   3'- -GGCAGGAGGGGCcagCGGAGCG-----UCCG- -5'
13947 3' -62.4 NC_003521.1 + 113606 0.67 0.710807
Target:  5'- cCCGUCCcccuggaagccCCCCGG-CGUCUUggcccaGCAGGUc -3'
miRNA:   3'- -GGCAGGa----------GGGGCCaGCGGAG------CGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 42333 0.77 0.241423
Target:  5'- gCCGUgCUCgCUGGUCGCgccgCUCGUGGGCg -3'
miRNA:   3'- -GGCAgGAGgGGCCAGCG----GAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 158841 0.68 0.655249
Target:  5'- uCgGUagaCUUCUCaGaguuUCGCCUCGCAGGCg -3'
miRNA:   3'- -GgCAg--GAGGGGcC----AGCGGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 56596 0.68 0.683187
Target:  5'- gCGcCCUgCgCGGccgCGCCUCGguGGUc -3'
miRNA:   3'- gGCaGGAgGgGCCa--GCGGAGCguCCG- -5'
13947 3' -62.4 NC_003521.1 + 18350 0.69 0.617809
Target:  5'- uCCGUCC-CCgCGGccgUCGUCUC-CAGGUc -3'
miRNA:   3'- -GGCAGGaGGgGCC---AGCGGAGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 131351 0.7 0.571252
Target:  5'- gCCGUCCggagCCCgcgcgagccgCGGUCGCCgccaccgCGUccgAGGCc -3'
miRNA:   3'- -GGCAGGa---GGG----------GCCAGCGGa------GCG---UCCG- -5'
13947 3' -62.4 NC_003521.1 + 130139 0.7 0.534619
Target:  5'- uCC-UCCUCCCCGGcCGUCacccacucgUCGCAGuaGCa -3'
miRNA:   3'- -GGcAGGAGGGGCCaGCGG---------AGCGUC--CG- -5'
13947 3' -62.4 NC_003521.1 + 92349 0.71 0.47877
Target:  5'- aCCGcCCUgcgcaccccccgacCCCCGGUcCGCCaUCGCuacgggAGGCa -3'
miRNA:   3'- -GGCaGGA--------------GGGGCCA-GCGG-AGCG------UCCG- -5'
13947 3' -62.4 NC_003521.1 + 186804 0.67 0.746817
Target:  5'- gCCGgcccugCCUCCCaCGGa-GCCccCGCuGGCg -3'
miRNA:   3'- -GGCa-----GGAGGG-GCCagCGGa-GCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 356 0.67 0.737923
Target:  5'- uUCGgCCUCCCUGcaCGCC-CGC-GGCa -3'
miRNA:   3'- -GGCaGGAGGGGCcaGCGGaGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 99256 0.67 0.719911
Target:  5'- aCCGcgguaCCUCCCCuGaCGCCUCcuaaAGGCg -3'
miRNA:   3'- -GGCa----GGAGGGGcCaGCGGAGcg--UCCG- -5'
13947 3' -62.4 NC_003521.1 + 113820 0.67 0.719911
Target:  5'- gCGUCCUCCUCgcgcugguGGUCGUCccggCGCgAGGg -3'
miRNA:   3'- gGCAGGAGGGG--------CCAGCGGa---GCG-UCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.