miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 5' -49.2 NC_003521.1 + 183608 0.66 0.999664
Target:  5'- -aGCUaucaugcGAGCaaCGUGGGGCUUCAu -3'
miRNA:   3'- agCGAauuu---UUCGg-GCACCUCGAAGU- -5'
13947 5' -49.2 NC_003521.1 + 68696 0.66 0.999664
Target:  5'- gCGgUUGAGGGGCgCCGgcGGAGCcgUCGc -3'
miRNA:   3'- aGCgAAUUUUUCG-GGCa-CCUCGa-AGU- -5'
13947 5' -49.2 NC_003521.1 + 85986 0.66 0.999664
Target:  5'- gCGCUgcAGGAGCagggCGUGGAGgaCUUCu -3'
miRNA:   3'- aGCGAauUUUUCGg---GCACCUC--GAAGu -5'
13947 5' -49.2 NC_003521.1 + 220757 0.66 0.99964
Target:  5'- aCGCUgcugcucucccggguGGAAGCCC-UGGAGUggUUCAa -3'
miRNA:   3'- aGCGAau-------------UUUUCGGGcACCUCG--AAGU- -5'
13947 5' -49.2 NC_003521.1 + 44481 0.66 0.999579
Target:  5'- -aGCUUGAGcAGCCCGUugaGGAuGCgcgUCc -3'
miRNA:   3'- agCGAAUUUuUCGGGCA---CCU-CGa--AGu -5'
13947 5' -49.2 NC_003521.1 + 99900 0.66 0.999579
Target:  5'- gUCGUgcgggUUGAccgguAGCCCGUGGAGguagugguaCUUCAu -3'
miRNA:   3'- -AGCG-----AAUUuu---UCGGGCACCUC---------GAAGU- -5'
13947 5' -49.2 NC_003521.1 + 101583 0.66 0.999569
Target:  5'- cCGCgcGAGGAGCCCcguacagGUGGuAGCU-CAg -3'
miRNA:   3'- aGCGaaUUUUUCGGG-------CACC-UCGAaGU- -5'
13947 5' -49.2 NC_003521.1 + 119971 0.67 0.999351
Target:  5'- cCGCU---GAGGCugguggacgCCGUGGAGCUg-- -3'
miRNA:   3'- aGCGAauuUUUCG---------GGCACCUCGAagu -5'
13947 5' -49.2 NC_003521.1 + 93228 0.67 0.999202
Target:  5'- gUUGC-UGGGGGGCCCGaUGGuGCUg-- -3'
miRNA:   3'- -AGCGaAUUUUUCGGGC-ACCuCGAagu -5'
13947 5' -49.2 NC_003521.1 + 100143 0.67 0.999202
Target:  5'- cUGCg--GGAAGgCCGUGGGGCUc-- -3'
miRNA:   3'- aGCGaauUUUUCgGGCACCUCGAagu -5'
13947 5' -49.2 NC_003521.1 + 139965 0.67 0.999202
Target:  5'- gCGCUcuUGAGgcGCUCGUGGAacaccaacucgcGCUUCu -3'
miRNA:   3'- aGCGA--AUUUuuCGGGCACCU------------CGAAGu -5'
13947 5' -49.2 NC_003521.1 + 63650 0.67 0.998965
Target:  5'- aCGCgcaaccccguGCCCGUGaaccaGAGCUUCGu -3'
miRNA:   3'- aGCGaauuuuu---CGGGCAC-----CUCGAAGU- -5'
13947 5' -49.2 NC_003521.1 + 66007 0.67 0.998814
Target:  5'- gUCGCUgcugGAGAAcCCCGUGuGGGCg--- -3'
miRNA:   3'- -AGCGAa---UUUUUcGGGCAC-CUCGaagu -5'
13947 5' -49.2 NC_003521.1 + 22808 0.67 0.998565
Target:  5'- gUGUUgacGGGAGCCCGUgGGAGCcggcgUCGa -3'
miRNA:   3'- aGCGAau-UUUUCGGGCA-CCUCGa----AGU- -5'
13947 5' -49.2 NC_003521.1 + 221877 0.68 0.998275
Target:  5'- gUCGCUgggguAGGGCgUGUGGGGCg--- -3'
miRNA:   3'- -AGCGAauu--UUUCGgGCACCUCGaagu -5'
13947 5' -49.2 NC_003521.1 + 118265 0.68 0.998275
Target:  5'- gCGCUU---GAGCUCGUGGAugGCgUCGc -3'
miRNA:   3'- aGCGAAuuuUUCGGGCACCU--CGaAGU- -5'
13947 5' -49.2 NC_003521.1 + 195143 0.68 0.998275
Target:  5'- cUCGCggucgAAGAGGgCCGUGGAGaagaggCAg -3'
miRNA:   3'- -AGCGaa---UUUUUCgGGCACCUCgaa---GU- -5'
13947 5' -49.2 NC_003521.1 + 235413 0.68 0.997936
Target:  5'- aUCGCgcucGGAGUCCGUGGuGGCgaUCAc -3'
miRNA:   3'- -AGCGaauuUUUCGGGCACC-UCGa-AGU- -5'
13947 5' -49.2 NC_003521.1 + 157189 0.68 0.997936
Target:  5'- cUGCaagaGAGAAGCCCGggugGGAGCg--- -3'
miRNA:   3'- aGCGaa--UUUUUCGGGCa---CCUCGaagu -5'
13947 5' -49.2 NC_003521.1 + 56914 0.69 0.995974
Target:  5'- -aGCggGAGGugcaccGGCCCGUGGugcGCUUCu -3'
miRNA:   3'- agCGaaUUUU------UCGGGCACCu--CGAAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.