Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 16809 | 1.1 | 0.015587 |
Target: 5'- cUCGCUUAAAAAGCCCGUGGAGCUUCAa -3' miRNA: 3'- -AGCGAAUUUUUCGGGCACCUCGAAGU- -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 180505 | 0.79 | 0.712651 |
Target: 5'- gUUGCccAGAGAGCCCGUGGGGUgUCGu -3' miRNA: 3'- -AGCGaaUUUUUCGGGCACCUCGaAGU- -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 33269 | 0.77 | 0.827516 |
Target: 5'- -aGCUggccGAGAGCCUGcGGGGCUUCAu -3' miRNA: 3'- agCGAau--UUUUCGGGCaCCUCGAAGU- -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 137439 | 0.74 | 0.915983 |
Target: 5'- gCGCgc-AGGAGCCCGUGGAGgUaUCGc -3' miRNA: 3'- aGCGaauUUUUCGGGCACCUCgA-AGU- -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 101395 | 0.72 | 0.969511 |
Target: 5'- cCGCUUGacggccacgcagGAGAGCCCGUGcGGCUg-- -3' miRNA: 3'- aGCGAAU------------UUUUCGGGCACcUCGAagu -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 156781 | 0.71 | 0.980025 |
Target: 5'- cUCGCUcgAGAAGGUggCCGUGGA-CUUCGg -3' miRNA: 3'- -AGCGAa-UUUUUCG--GGCACCUcGAAGU- -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 216858 | 0.71 | 0.980025 |
Target: 5'- aCGaCUguuccAGGCCCGUGGAGCg--- -3' miRNA: 3'- aGC-GAauuu-UUCGGGCACCUCGaagu -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 31097 | 0.71 | 0.984134 |
Target: 5'- gUCGC--AAGgcGCCCGUGGAGUUcgCGg -3' miRNA: 3'- -AGCGaaUUUuuCGGGCACCUCGAa-GU- -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 59214 | 0.69 | 0.99453 |
Target: 5'- uUCGCgccAGAGGGCCUGgUGGAG-UUCGa -3' miRNA: 3'- -AGCGaa-UUUUUCGGGC-ACCUCgAAGU- -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 56914 | 0.69 | 0.995974 |
Target: 5'- -aGCggGAGGugcaccGGCCCGUGGugcGCUUCu -3' miRNA: 3'- agCGaaUUUU------UCGGGCACCu--CGAAGu -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 142963 | 0.69 | 0.995974 |
Target: 5'- cUCGCggcagcGGAGUCCGUGGuAGCUg-- -3' miRNA: 3'- -AGCGaauu--UUUCGGGCACC-UCGAagu -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 73692 | 0.69 | 0.99453 |
Target: 5'- gCGCUgcucAAGAGCuUCGUGGAGCg--- -3' miRNA: 3'- aGCGAau--UUUUCG-GGCACCUCGaagu -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 187574 | 0.69 | 0.99453 |
Target: 5'- uUCGCc----AAGUCCGcgGGGGCUUCGc -3' miRNA: 3'- -AGCGaauuuUUCGGGCa-CCUCGAAGU- -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 118265 | 0.68 | 0.998275 |
Target: 5'- gCGCUU---GAGCUCGUGGAugGCgUCGc -3' miRNA: 3'- aGCGAAuuuUUCGGGCACCU--CGaAGU- -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 157189 | 0.68 | 0.997936 |
Target: 5'- cUGCaagaGAGAAGCCCGggugGGAGCg--- -3' miRNA: 3'- aGCGaa--UUUUUCGGGCa---CCUCGaagu -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 221877 | 0.68 | 0.998275 |
Target: 5'- gUCGCUgggguAGGGCgUGUGGGGCg--- -3' miRNA: 3'- -AGCGAauu--UUUCGgGCACCUCGaagu -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 195143 | 0.68 | 0.998275 |
Target: 5'- cUCGCggucgAAGAGGgCCGUGGAGaagaggCAg -3' miRNA: 3'- -AGCGaa---UUUUUCgGGCACCUCgaa---GU- -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 235413 | 0.68 | 0.997936 |
Target: 5'- aUCGCgcucGGAGUCCGUGGuGGCgaUCAc -3' miRNA: 3'- -AGCGaauuUUUCGGGCACC-UCGa-AGU- -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 66007 | 0.67 | 0.998814 |
Target: 5'- gUCGCUgcugGAGAAcCCCGUGuGGGCg--- -3' miRNA: 3'- -AGCGAa---UUUUUcGGGCAC-CUCGaagu -5' |
|||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 100143 | 0.67 | 0.999202 |
Target: 5'- cUGCg--GGAAGgCCGUGGGGCUc-- -3' miRNA: 3'- aGCGaauUUUUCgGGCACCUCGAagu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home