miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 5' -49.2 NC_003521.1 + 235413 0.68 0.997936
Target:  5'- aUCGCgcucGGAGUCCGUGGuGGCgaUCAc -3'
miRNA:   3'- -AGCGaauuUUUCGGGCACC-UCGa-AGU- -5'
13947 5' -49.2 NC_003521.1 + 221877 0.68 0.998275
Target:  5'- gUCGCUgggguAGGGCgUGUGGGGCg--- -3'
miRNA:   3'- -AGCGAauu--UUUCGgGCACCUCGaagu -5'
13947 5' -49.2 NC_003521.1 + 220757 0.66 0.99964
Target:  5'- aCGCUgcugcucucccggguGGAAGCCC-UGGAGUggUUCAa -3'
miRNA:   3'- aGCGAau-------------UUUUCGGGcACCUCG--AAGU- -5'
13947 5' -49.2 NC_003521.1 + 216858 0.71 0.980025
Target:  5'- aCGaCUguuccAGGCCCGUGGAGCg--- -3'
miRNA:   3'- aGC-GAauuu-UUCGGGCACCUCGaagu -5'
13947 5' -49.2 NC_003521.1 + 195143 0.68 0.998275
Target:  5'- cUCGCggucgAAGAGGgCCGUGGAGaagaggCAg -3'
miRNA:   3'- -AGCGaa---UUUUUCgGGCACCUCgaa---GU- -5'
13947 5' -49.2 NC_003521.1 + 187574 0.69 0.99453
Target:  5'- uUCGCc----AAGUCCGcgGGGGCUUCGc -3'
miRNA:   3'- -AGCGaauuuUUCGGGCa-CCUCGAAGU- -5'
13947 5' -49.2 NC_003521.1 + 183608 0.66 0.999664
Target:  5'- -aGCUaucaugcGAGCaaCGUGGGGCUUCAu -3'
miRNA:   3'- agCGAauuu---UUCGg-GCACCUCGAAGU- -5'
13947 5' -49.2 NC_003521.1 + 180505 0.79 0.712651
Target:  5'- gUUGCccAGAGAGCCCGUGGGGUgUCGu -3'
miRNA:   3'- -AGCGaaUUUUUCGGGCACCUCGaAGU- -5'
13947 5' -49.2 NC_003521.1 + 157189 0.68 0.997936
Target:  5'- cUGCaagaGAGAAGCCCGggugGGAGCg--- -3'
miRNA:   3'- aGCGaa--UUUUUCGGGCa---CCUCGaagu -5'
13947 5' -49.2 NC_003521.1 + 156781 0.71 0.980025
Target:  5'- cUCGCUcgAGAAGGUggCCGUGGA-CUUCGg -3'
miRNA:   3'- -AGCGAa-UUUUUCG--GGCACCUcGAAGU- -5'
13947 5' -49.2 NC_003521.1 + 142963 0.69 0.995974
Target:  5'- cUCGCggcagcGGAGUCCGUGGuAGCUg-- -3'
miRNA:   3'- -AGCGaauu--UUUCGGGCACC-UCGAagu -5'
13947 5' -49.2 NC_003521.1 + 139965 0.67 0.999202
Target:  5'- gCGCUcuUGAGgcGCUCGUGGAacaccaacucgcGCUUCu -3'
miRNA:   3'- aGCGA--AUUUuuCGGGCACCU------------CGAAGu -5'
13947 5' -49.2 NC_003521.1 + 137439 0.74 0.915983
Target:  5'- gCGCgc-AGGAGCCCGUGGAGgUaUCGc -3'
miRNA:   3'- aGCGaauUUUUCGGGCACCUCgA-AGU- -5'
13947 5' -49.2 NC_003521.1 + 119971 0.67 0.999351
Target:  5'- cCGCU---GAGGCugguggacgCCGUGGAGCUg-- -3'
miRNA:   3'- aGCGAauuUUUCG---------GGCACCUCGAagu -5'
13947 5' -49.2 NC_003521.1 + 118265 0.68 0.998275
Target:  5'- gCGCUU---GAGCUCGUGGAugGCgUCGc -3'
miRNA:   3'- aGCGAAuuuUUCGGGCACCU--CGaAGU- -5'
13947 5' -49.2 NC_003521.1 + 101583 0.66 0.999569
Target:  5'- cCGCgcGAGGAGCCCcguacagGUGGuAGCU-CAg -3'
miRNA:   3'- aGCGaaUUUUUCGGG-------CACC-UCGAaGU- -5'
13947 5' -49.2 NC_003521.1 + 101395 0.72 0.969511
Target:  5'- cCGCUUGacggccacgcagGAGAGCCCGUGcGGCUg-- -3'
miRNA:   3'- aGCGAAU------------UUUUCGGGCACcUCGAagu -5'
13947 5' -49.2 NC_003521.1 + 100143 0.67 0.999202
Target:  5'- cUGCg--GGAAGgCCGUGGGGCUc-- -3'
miRNA:   3'- aGCGaauUUUUCgGGCACCUCGAagu -5'
13947 5' -49.2 NC_003521.1 + 99900 0.66 0.999579
Target:  5'- gUCGUgcgggUUGAccgguAGCCCGUGGAGguagugguaCUUCAu -3'
miRNA:   3'- -AGCG-----AAUUuu---UCGGGCACCUC---------GAAGU- -5'
13947 5' -49.2 NC_003521.1 + 93228 0.67 0.999202
Target:  5'- gUUGC-UGGGGGGCCCGaUGGuGCUg-- -3'
miRNA:   3'- -AGCGaAUUUUUCGGGC-ACCuCGAagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.