miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 5' -49.2 NC_003521.1 + 183608 0.66 0.999664
Target:  5'- -aGCUaucaugcGAGCaaCGUGGGGCUUCAu -3'
miRNA:   3'- agCGAauuu---UUCGg-GCACCUCGAAGU- -5'
13947 5' -49.2 NC_003521.1 + 68696 0.66 0.999664
Target:  5'- gCGgUUGAGGGGCgCCGgcGGAGCcgUCGc -3'
miRNA:   3'- aGCgAAUUUUUCG-GGCa-CCUCGa-AGU- -5'
13947 5' -49.2 NC_003521.1 + 118265 0.68 0.998275
Target:  5'- gCGCUU---GAGCUCGUGGAugGCgUCGc -3'
miRNA:   3'- aGCGAAuuuUUCGGGCACCU--CGaAGU- -5'
13947 5' -49.2 NC_003521.1 + 195143 0.68 0.998275
Target:  5'- cUCGCggucgAAGAGGgCCGUGGAGaagaggCAg -3'
miRNA:   3'- -AGCGaa---UUUUUCgGGCACCUCgaa---GU- -5'
13947 5' -49.2 NC_003521.1 + 235413 0.68 0.997936
Target:  5'- aUCGCgcucGGAGUCCGUGGuGGCgaUCAc -3'
miRNA:   3'- -AGCGaauuUUUCGGGCACC-UCGa-AGU- -5'
13947 5' -49.2 NC_003521.1 + 142963 0.69 0.995974
Target:  5'- cUCGCggcagcGGAGUCCGUGGuAGCUg-- -3'
miRNA:   3'- -AGCGaauu--UUUCGGGCACC-UCGAagu -5'
13947 5' -49.2 NC_003521.1 + 56914 0.69 0.995974
Target:  5'- -aGCggGAGGugcaccGGCCCGUGGugcGCUUCu -3'
miRNA:   3'- agCGaaUUUU------UCGGGCACCu--CGAAGu -5'
13947 5' -49.2 NC_003521.1 + 59214 0.69 0.99453
Target:  5'- uUCGCgccAGAGGGCCUGgUGGAG-UUCGa -3'
miRNA:   3'- -AGCGaa-UUUUUCGGGC-ACCUCgAAGU- -5'
13947 5' -49.2 NC_003521.1 + 31097 0.71 0.984134
Target:  5'- gUCGC--AAGgcGCCCGUGGAGUUcgCGg -3'
miRNA:   3'- -AGCGaaUUUuuCGGGCACCUCGAa-GU- -5'
13947 5' -49.2 NC_003521.1 + 33269 0.77 0.827516
Target:  5'- -aGCUggccGAGAGCCUGcGGGGCUUCAu -3'
miRNA:   3'- agCGAau--UUUUCGGGCaCCUCGAAGU- -5'
13947 5' -49.2 NC_003521.1 + 16809 1.1 0.015587
Target:  5'- cUCGCUUAAAAAGCCCGUGGAGCUUCAa -3'
miRNA:   3'- -AGCGAAUUUUUCGGGCACCUCGAAGU- -5'
13947 5' -49.2 NC_003521.1 + 85986 0.66 0.999664
Target:  5'- gCGCUgcAGGAGCagggCGUGGAGgaCUUCu -3'
miRNA:   3'- aGCGAauUUUUCGg---GCACCUC--GAAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.