Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13947 | 5' | -49.2 | NC_003521.1 | + | 139965 | 0.67 | 0.999202 |
Target: 5'- gCGCUcuUGAGgcGCUCGUGGAacaccaacucgcGCUUCu -3' miRNA: 3'- aGCGA--AUUUuuCGGGCACCU------------CGAAGu -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 142963 | 0.69 | 0.995974 |
Target: 5'- cUCGCggcagcGGAGUCCGUGGuAGCUg-- -3' miRNA: 3'- -AGCGaauu--UUUCGGGCACC-UCGAagu -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 156781 | 0.71 | 0.980025 |
Target: 5'- cUCGCUcgAGAAGGUggCCGUGGA-CUUCGg -3' miRNA: 3'- -AGCGAa-UUUUUCG--GGCACCUcGAAGU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 157189 | 0.68 | 0.997936 |
Target: 5'- cUGCaagaGAGAAGCCCGggugGGAGCg--- -3' miRNA: 3'- aGCGaa--UUUUUCGGGCa---CCUCGaagu -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 180505 | 0.79 | 0.712651 |
Target: 5'- gUUGCccAGAGAGCCCGUGGGGUgUCGu -3' miRNA: 3'- -AGCGaaUUUUUCGGGCACCUCGaAGU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 183608 | 0.66 | 0.999664 |
Target: 5'- -aGCUaucaugcGAGCaaCGUGGGGCUUCAu -3' miRNA: 3'- agCGAauuu---UUCGg-GCACCUCGAAGU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 187574 | 0.69 | 0.99453 |
Target: 5'- uUCGCc----AAGUCCGcgGGGGCUUCGc -3' miRNA: 3'- -AGCGaauuuUUCGGGCa-CCUCGAAGU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 195143 | 0.68 | 0.998275 |
Target: 5'- cUCGCggucgAAGAGGgCCGUGGAGaagaggCAg -3' miRNA: 3'- -AGCGaa---UUUUUCgGGCACCUCgaa---GU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 216858 | 0.71 | 0.980025 |
Target: 5'- aCGaCUguuccAGGCCCGUGGAGCg--- -3' miRNA: 3'- aGC-GAauuu-UUCGGGCACCUCGaagu -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 220757 | 0.66 | 0.99964 |
Target: 5'- aCGCUgcugcucucccggguGGAAGCCC-UGGAGUggUUCAa -3' miRNA: 3'- aGCGAau-------------UUUUCGGGcACCUCG--AAGU- -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 221877 | 0.68 | 0.998275 |
Target: 5'- gUCGCUgggguAGGGCgUGUGGGGCg--- -3' miRNA: 3'- -AGCGAauu--UUUCGgGCACCUCGaagu -5' |
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13947 | 5' | -49.2 | NC_003521.1 | + | 235413 | 0.68 | 0.997936 |
Target: 5'- aUCGCgcucGGAGUCCGUGGuGGCgaUCAc -3' miRNA: 3'- -AGCGaauuUUUCGGGCACC-UCGa-AGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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